RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 CATSPERDQ86XM0 798 aa7.52□□□□□ -1.2
LIMCH1-216ENST00000512820 MRGPRX4Q96LA9 322 aa7.52□□□□□ -1.2
LIMCH1-216ENST00000512820 OXGR1Q96P68 337 aa7.52□□□□□ -1.2
LIMCH1-216ENST00000512820 FN3KRPQ9HA64 309 aa7.52□□□□□ -1.2
LIMCH1-216ENST00000512820 PLEKHA2Q9HB19 425 aa7.52□□□□□ -1.2
LIMCH1-216ENST00000512820 RAB18Q9NP72 206 aa7.52□□□□□ -1.2
LIMCH1-216ENST00000512820 FAM96BQ9Y3D0 163 aa7.52□□□□□ -1.2
LIMCH1-216ENST00000512820 ANKRD36A6QL64 1941 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 UMAD1C9J7I0 102 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 M0R135 149 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 GPR137BO60478 399 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 UPK3AO75631 287 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 GUSBP08236 651 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 SFTA3P0C7M3 94 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 DUSP1P28562 367 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 BTCP35070 178 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 TMEM182Q6ZP80 229 aaPredicted RBP7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 WDR5BQ86VZ2 330 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 STPG2Q8N412 459 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 OR2G3Q8NGZ4 309 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 C8orf44Q96CB5 159 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 ZNF799Q96GE5 643 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 BCO1Q9HAY6 547 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 PURGQ9UJV8 347 aaKnown RBP7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 CHD5Q8TDI0 1954 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 E5RGE8 158 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 HSPB6O14558 160 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 SMIM10L1P0DMW3 83 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 GLRA1P23415 457 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 PPIAP62937 165 aaKnown RBP7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 RPL19P84098 196 aaKnown RBP7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 RAB32Q13637 225 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 TMEM164Q5U3C3 297 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 C9orf135Q5VTT2 229 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 LANCL3Q6ZV70 420 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 NAA40Q86UY6 237 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 SLC25A42Q86VD7 318 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 SMIM10Q96HG1 83 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 AKR1E2Q96JD6 320 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 NPDC1Q9NQX5 325 aaPredicted RBP7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 RASL12Q9NYN1 266 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 NSG2Q9Y328 171 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 NSG1A0A0A6YYJ2 146 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 FAM221AA4D161 298 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 TRAPPC2LH3BP13 241 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 ADAP1O75689 374 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 CRHP06850 196 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 FOLR3P41439 243 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 ZNF273Q14593 569 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 SLC22A25Q6T423 547 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 PLXDC2Q6UX71 529 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 MENTQ9BUN1 341 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 GHRLQ9UBU3 117 aa7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 ASCC3Q8N3C0 2202 aaKnown RBP7.52□□□□□ -1.21
LIMCH1-216ENST00000512820 FTCDNL1E5RQL4 147 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 FOXS1O43638 330 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 SLC34A2O95436 690 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 CD37P11049 281 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 IL9P15248 144 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 FAHP16930 419 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 TAGLN2P37802 199 aaKnown RBP7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 RBP2P50120 134 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 IDH3GP51553 393 aaPredicted RBP7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 H2BFSP57053 126 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 PIGPP57054 158 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 C9orf50Q5SZB4 431 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 FAHD2BQ6P2I3 314 aaPredicted RBP7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 MAML2Q8IZL2 1156 aaPredicted RBP7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 ZNF485Q8NCK3 441 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 LFNGQ8NES3 379 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 FAHD2AQ96GK7 314 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 DUSP23Q9BVJ7 150 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 VN1R1Q9GZP7 353 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 CRISPLD2Q9H0B8 497 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 ATG2BQ96BY7 2078 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 CDK2AP1O14519 115 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 XRCC2O43543 280 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 BGLAPP02818 100 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 ADRA2CP18825 462 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 SSR4P51571 173 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 SUMO3P55854 103 aaPredicted RBP7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 NDUFA6P56556 154 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 SLC37A1P57057 533 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 TLE4Q04727 773 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 MRPL49Q13405 166 aaKnown RBP7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 RPUSD3Q6P087 351 aaKnown RBP7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 C16orf47Q6ZP98 133 aaPredicted RBP7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 BATF2Q8N1L9 274 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 NOXO1Q8NFA2 376 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 OIT3Q8WWZ8 545 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 GPX7Q96SL4 187 aaPredicted RBP7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 AMELYQ99218 206 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 MFRPQ9BY79 579 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 KCNIP1Q9NZI2 227 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 DICER1Q9UPY3 1922 aaKnown RBP7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 SERPINE3A8MV23 424 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 RER1O15258 196 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 HBE1P02100 147 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 ASAH2BP0C7U1 165 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 JMJD7P0C870 316 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms