RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 KIR2DL5AQ8N109 375 aa10.76□□□□□ -0.69
LIMCH1-213ENST00000511496 FAM160A2Q8N612 972 aaPredicted RBP10.76□□□□□ -0.69
LIMCH1-213ENST00000511496 SLC24A4Q8NFF2 622 aa10.76□□□□□ -0.69
LIMCH1-213ENST00000511496 OR51A2Q8NGJ7 313 aa10.76□□□□□ -0.69
LIMCH1-213ENST00000511496 ABHD14AQ9BUJ0 271 aa10.76□□□□□ -0.69
LIMCH1-213ENST00000511496 NMNAT2Q9BZQ4 307 aa10.76□□□□□ -0.69
LIMCH1-213ENST00000511496 COMMD4Q9H0A8 199 aa10.76□□□□□ -0.69
LIMCH1-213ENST00000511496 WSB1Q9Y6I7 421 aa10.76□□□□□ -0.69
LIMCH1-213ENST00000511496 A0A0A6YYH2 397 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 A6NJ64 397 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 TACSTD2P09758 323 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 ZNF708P17019 499 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 OR1Q1Q15612 314 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 TMEM128Q5BJH2 165 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 PLXDC2Q6UX71 529 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 TOMM20LQ6UXN7 152 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 GCNT2Q8N0V5 402 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 OR2L3Q8NG85 312 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 ZPLD1Q8TCW7 415 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 RNF128Q8TEB7 428 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 IL22RA2Q969J5 263 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 SLC35E1Q96K37 410 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 SLCO5A1Q9H2Y9 848 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 RAB18Q9NP72 206 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 FLRT3Q9NZU0 649 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 BORCS7-ASMTA0A0B4J1R7 106 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 NPIPA5A0A0B4J1W7 369 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 ZNF320A2RRD8 509 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 C1QTNF3-AMACRE9PGA6 284 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 NPIPA7E9PJI5 369 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 CD1AP06126 327 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 SRP19P09132 144 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 NPIPA8P0DM63 369 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 LAMP2P13473 410 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 SLC6A6P31641 620 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 CST9LP1Q5W188 147 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 TMPRSS7Q7RTY8 843 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 KMT5CQ86Y97 462 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 ADAMTS15Q8TE58 950 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 DOK4Q8TEW6 326 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 FAM46BQ96A09 425 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 ZNF514Q96K75 400 aaPredicted RBP10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 GPR62Q9BZJ7 368 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 FBRSQ9HAH7 460 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 PLAGL1Q9UM63 463 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 LAMP3Q9UQV4 416 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 KCNK6Q9Y257 313 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 RBM7Q9Y580 266 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 USP34Q70CQ2 3546 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 ZIC2O95409 532 aaPredicted RBP10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 ASGR1P07306 291 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 UMODP07911 640 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 OR10J1P30954 320 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 UCP2P55851 309 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 HLA-DRB3P79483 266 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 LMAN2Q12907 356 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 CDKN3Q16667 212 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 ZFP62Q8NB50 900 aaPredicted RBP10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 SLC26A10Q8NG04 563 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 OR4C5Q8NGB2 326 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 CDS1Q92903 461 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 PGAM5Q96HS1 289 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 NRTNQ99748 197 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 MIEN1Q9BRT3 115 aa10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 SEPSECSQ9HD40 501 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 ZNF443Q9Y2A4 671 aaPredicted RBP10.75□□□□□ -0.69
LIMCH1-213ENST00000511496 TRDCB7Z8K6 153 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 SLC17A2O00624 439 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 KAT7O95251 611 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 GAPDHP04406 335 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 BCKDHBP21953 392 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 APOBEC1P41238 236 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 C12orf76Q8N812 135 aaPredicted RBP10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 PPTC7Q8NI37 304 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 KLHDC2Q9Y2U9 406 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 PDE4DIPQ5VU43 2346 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 SCN8AQ9UQD0 1980 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 LYL1P12980 280 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 BSGP35613 385 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 SQSTM1Q13501 440 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 ARHGAP19Q14CB8 494 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 OR8G2PQ6IF36 304 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 TMEM156Q8N614 296 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 C10orf53Q8N6V4 93 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 MRGPRDQ8TDS7 321 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 CIB3Q96Q77 187 aaPredicted RBP10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 RXFP3Q9NSD7 469 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 HIF3AQ9Y2N7 669 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 MEMO1Q9Y316 297 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 PLXNB3Q9ULL4 1909 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 A0A1W2PQ45 241 aaPredicted RBP10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 A0A1W2PQY0 241 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 FAM221AA4D161 298 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 KNG1P01042 644 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 SEC11BP0C7V7 166 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 CXCR1P25024 350 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 CDC34P49427 236 aaPredicted RBP10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 ERVS71-1P61550 626 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 FBXO42Q6P3S6 717 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 POC1AQ8NBT0 407 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms