RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 GLYATL1Q969I3 302 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 ADIPOR1Q96A54 375 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 ULK4Q96C45 1275 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 MED8Q96G25 268 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 SMIM10Q96HG1 83 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 NARS2Q96I59 477 aaKnown RBP1.4□□□□□ -2.19
NUP54-208ENST00000508604 CAPNS2Q96L46 248 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 CXorf58Q96LI9 332 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 HYLS1Q96M11 299 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 CNBD2Q96M20 576 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 NOL4LQ96MY1 436 aaPredicted RBP1.4□□□□□ -2.19
NUP54-208ENST00000508604 GPR137Q96N19 417 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 OR5B2Q96R09 309 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 OR2V2Q96R30 315 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 KCNA7Q96RP8 456 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 PLEKHF1Q96S99 279 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 ZNF607Q96SK3 696 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 RNF2Q99496 336 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 SORT1Q99523 831 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 PHB2Q99623 299 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 OMDQ99983 421 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 APOL4Q9BPW4 351 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 KLHDC3Q9BQ90 382 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 FAM173AQ9BQD7 235 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 SLC35A5Q9BS91 424 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 TMEM109Q9BVC6 243 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 HINT2Q9BX68 163 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 PRRG3Q9BZD7 231 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 COMMD4Q9H0A8 199 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 ILKAPQ9H0C8 392 aaPredicted RBP1.4□□□□□ -2.19
NUP54-208ENST00000508604 SLC38A1Q9H2H9 487 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 TMEM185BQ9H7F4 350 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 GEMIN7Q9H840 131 aaKnown RBP1.4□□□□□ -2.19
NUP54-208ENST00000508604 TPT1P8Q9HAU6 139 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 ABCB9Q9NP78 766 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 TMEM138Q9NPI0 162 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 PIGVQ9NUD9 493 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 C1orf109Q9NX04 203 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 DDIT4Q9NX09 232 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 MED11Q9P086 117 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 GCNT4Q9P109 453 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 OR12D3Q9UGF7 316 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 RWDD2AQ9UIY3 292 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 SCML1Q9UN30 329 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 POFUT2Q9Y2G5 429 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 SBDSQ9Y3A5 250 aaKnown RBP eCLIP1.4□□□□□ -2.19
NUP54-208ENST00000508604 RHBDD3Q9Y3P4 386 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 TBL2Q9Y4P3 447 aaKnown RBP1.4□□□□□ -2.19
NUP54-208ENST00000508604 MRPS18BQ9Y676 258 aaKnown RBP1.4□□□□□ -2.19
NUP54-208ENST00000508604 U3KQ87 197 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 WDR62O43379 1518 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 ADGRB3O60242 1522 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 ABCC2Q92887 1545 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 ARHGEF12Q9NZN5 1544 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 USP42Q9H9J4 1324 aaKnown RBP1.4□□□□□ -2.19
NUP54-208ENST00000508604 KIF20BQ96Q89 1820 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 RNF17Q9BXT8 1623 aaKnown RBP1.4□□□□□ -2.19
NUP54-208ENST00000508604 BIVM-ERCC5R4GMW8 1640 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 AKAP11Q9UKA4 1901 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 SUPT6HQ7KZ85 1726 aaKnown RBP1.4□□□□□ -2.19
NUP54-208ENST00000508604 GRIN2BQ13224 1484 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 ARHGEF11O15085 1522 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 SYCP2Q9BX26 1530 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 CHD2O14647 1828 aaKnown RBP1.39□□□□□ -2.19
NUP54-208ENST00000508604 NPIPA5A0A0B4J1W7 369 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 A0A1B0GW55 424 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 A0A1W2PNV4 684 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 TMEM150BA6NC51 233 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 FBLL1A6NHQ2 334 aaKnown RBP1.39□□□□□ -2.19
NUP54-208ENST00000508604 OR2AG2A6NM03 316 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 NPIPA5E9PKD4 350 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 RNASEK-C17orf49H0YIS7 233 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 H3BMQ9 156 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 H3BNH8 94 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 SGK494L7N484 410 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 M0R036 132 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 DNASE2O00115 360 aaPredicted RBP1.39□□□□□ -2.19
NUP54-208ENST00000508604 BTN3A3O00478 584 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 DLGAP1O14490 977 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 IMPA2O14732 288 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 UBDO15205 165 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 GYG2O15488 501 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 MRPS14O60783 128 aaKnown RBP1.39□□□□□ -2.19
NUP54-208ENST00000508604 SNNO75324 88 aaPredicted RBP1.39□□□□□ -2.19
NUP54-208ENST00000508604 UPK1BO75841 260 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 PIAS1O75925 651 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 OR2B3O76000 313 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 OR2J2O76002 312 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 B3GAT3O94766 335 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 NDUFB10O96000 172 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 RLN2P04090 185 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 SHBGP04278 402 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 RPN2P04844 631 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 GYPCP04921 128 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 ERCC1P07992 297 aaPredicted RBP1.39□□□□□ -2.19
NUP54-208ENST00000508604 DUX4L2P0CJ85 424 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 DUX4L3P0CJ86 424 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 DUX4L5P0CJ88 424 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 DUX4L6P0CJ89 424 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 DUX4L7P0CJ90 424 aa1.39□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms