RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 SPACA3Q8IXA5 215 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 GABRG1Q8N1C3 465 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 FAM89BQ8N5H3 189 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 JAGN1Q8N5M9 183 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 OR2M7Q8NG81 312 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 OR52H1Q8NGJ2 320 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 OR4C16Q8NGL9 310 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 GRPEL2Q8TAA5 225 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 KCNG3Q8TAE7 436 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 PP6455Q8WZ26 134 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 GCDHQ92947 438 aaPredicted RBP9.43□□□□□ -0.9
USP4-214ENST00000491791 FAM46BQ96A09 425 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 THOC3Q96J01 351 aaKnown RBP9.43□□□□□ -0.9
USP4-214ENST00000491791 JSRP1Q96MG2 331 aaPredicted RBP9.43□□□□□ -0.9
USP4-214ENST00000491791 SFXN2Q96NB2 322 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 TMEM246Q9BRR3 403 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 ULBP2Q9BZM5 246 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 ZNF703Q9H7S9 590 aaPredicted RBP9.43□□□□□ -0.9
USP4-214ENST00000491791 TMEM38BQ9NVV0 291 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 ZNF224Q9NZL3 707 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 LRFN1Q9P244 771 aa9.43□□□□□ -0.9
USP4-214ENST00000491791 CFAP46Q8IYW2 2715 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 PINLYPA6NC86 204 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 OR6C6A6NF89 314 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 WIPF3A6NGB9 483 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 OR6C65A6NJZ3 312 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 G3V3Y1 287 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 RPL36A-HNRNPH2H7BZ11 118 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 MASP2O00187 686 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 ARPC1BO15143 372 aaKnown RBP9.42□□□□□ -0.9
USP4-214ENST00000491791 SYNGR3O43761 229 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 DHRS3O75911 302 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 C1QL1O75973 258 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 WDPCPO95876 746 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 HPXP02790 462 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 ZNF735P0CB33 412 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 PTHLHP12272 177 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 PLA2G2AP14555 144 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 CXCL3P19876 107 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 NTF4P34130 210 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 RCVRNP35243 200 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 ZNF93P35789 620 aaPredicted RBP9.42□□□□□ -0.9
USP4-214ENST00000491791 GNALP38405 381 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 EIF1AXP47813 144 aaKnown RBP9.42□□□□□ -0.9
USP4-214ENST00000491791 VEGFCP49767 419 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 PRKXP51817 358 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 ZP1P60852 638 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 DHODHQ02127 395 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 SCRN3Q0VDG4 424 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 MEF2DQ14814 521 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 PNLIPRP3Q17RR3 467 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 SLC16A14Q7RTX9 510 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 ZNF843Q8N446 348 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 C9orf62Q8N4C0 152 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 ZNF283Q8N7M2 679 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 OR10D3Q8NH80 312 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 SPTSSAQ969W0 71 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 FBXO17Q96EF6 278 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 FER1L6-AS2Q96M78 137 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 BEX2Q9BXY8 128 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 ZNF436Q9C0F3 470 aaPredicted RBP9.42□□□□□ -0.9
USP4-214ENST00000491791 DLL4Q9NR61 685 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 MRPL15Q9P015 296 aaKnown RBP9.42□□□□□ -0.9
USP4-214ENST00000491791 UPB1Q9UBR1 384 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 B4GALT7Q9UBV7 327 aa9.42□□□□□ -0.9
USP4-214ENST00000491791 PHF3Q92576 2039 aaKnown RBP9.42□□□□□ -0.9
USP4-214ENST00000491791 IGHV3-15A0A0B4J1V0 119 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 ZNF724A8MTY0 619 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 STMND1H3BQB6 276 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 H3BSH0 61 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 CXCL13O43927 109 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 CREBL2O60519 120 aaPredicted RBP9.41□□□□□ -0.9
USP4-214ENST00000491791 MTRF1O75570 445 aaKnown RBP9.41□□□□□ -0.9
USP4-214ENST00000491791 GIPP09681 153 aaPredicted RBP9.41□□□□□ -0.9
USP4-214ENST00000491791 GSTT2P0CG29 244 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 GTF2F2P13984 249 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 POU3F2P20265 443 aaPredicted RBP9.41□□□□□ -0.9
USP4-214ENST00000491791 GDF1P27539 372 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 RAD52P43351 418 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 LHX2P50458 406 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 PCBD1P61457 104 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 GUCA2AQ02747 115 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 MPPED2Q15777 294 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 CRIP3Q6Q6R5 217 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 IGF2-ASQ6U949 168 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 FAM57BQ71RH2 274 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 ZNF767PQ75MW2 155 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 AAED1Q7RTV5 226 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 ABHD12BQ7Z5M8 362 aaPredicted RBP9.41□□□□□ -0.9
USP4-214ENST00000491791 ANGPTL5Q86XS5 388 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 DTX1Q86Y01 620 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 ZNF100Q8IYN0 542 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 MDS2Q8NDY4 140 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 OR13C9Q8NGT0 318 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 WBP1Q96G27 269 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 POM121Q96HA1 1249 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 PGAM5Q96HS1 289 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 LYZL4Q96KX0 146 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 GPR137Q96N19 417 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 RBM24Q9BX46 236 aaKnown RBP9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms