RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 NARFLQ9H6Q4 476 aa13.76□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 GCM1Q9NP62 436 aa13.76□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 TMEM106BQ9NUM4 274 aa13.76□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 EXOGQ9Y2C4 368 aaKnown RBP13.76□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 WIPI2Q9Y4P8 454 aa13.76□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 PCDHGB1Q9Y5G3 927 aa13.76□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.75□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 DAPL1A0PJW8 107 aa13.75□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 J3QRE1 110 aa13.75□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 IFNL4K9M1U5 179 aa13.75□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 SULT1C4O75897 302 aa13.75□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 RPP14O95059 124 aaKnown RBP13.75□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 CAPGP40121 348 aa13.75□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 MVKQ03426 396 aa13.75□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 HNRNPA0Q13151 305 aaKnown RBP13.75□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 MAB21L1Q13394 359 aa13.75□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 BCL2L15Q5TBC7 163 aa13.75□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 FAM220AQ7Z4H9 259 aa13.75□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 PEG10Q86TG7 708 aaKnown RBP13.75□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 COMMD2Q86X83 199 aa13.75□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 FTMTQ8N4E7 242 aa13.75□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 SPERTQ8NA61 448 aa13.75□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 SETD9Q8NE22 299 aa13.75□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 CLDND2Q8NHS1 167 aa13.75□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 HPS1Q92902 700 aa13.75□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 RAB1CQ92928 201 aa13.75□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 SIGLEC11Q96RL6 698 aa13.75□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 ADI1Q9BV57 179 aa13.75□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 G6PC2Q9NQR9 355 aa13.75□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 DCAF16Q9NXF7 216 aa13.75□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 OR52A1Q9UKL2 312 aa13.75□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 RPL36Q9Y3U8 105 aaKnown RBP13.75□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 SNX5Q9Y5X3 404 aa13.75□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 ACANP16112 2415 aa13.75□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 IGHV3-64DA0A0J9YX35 117 aa13.74□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 WNT9BO14905 357 aa13.74□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 WBP4O75554 376 aaKnown RBP13.74□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 IGLV3-1P01715 115 aa13.74□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 TTRP02766 147 aa13.74□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 ZNF16P17020 682 aaPredicted RBP13.74□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 ACKR3P25106 362 aa13.74□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 IL2RGP31785 369 aa13.74□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 GNALP38405 381 aa13.74□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 GATA4P43694 442 aa13.74□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 MZT1Q08AG7 82 aa13.74□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 IL18R1Q13478 541 aa13.74□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 LIPNQ5VXI9 398 aa13.74□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 CYB5R2Q6BCY4 276 aa13.74□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 MOGAT3Q86VF5 341 aa13.74□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 ACBD7Q8N6N7 88 aa13.74□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 ZNF420Q8TAQ5 688 aaPredicted RBP13.74□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 CNIH3Q8TBE1 160 aa13.74□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 OR51E1Q8TCB6 317 aa13.74□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 SOX7Q9BT81 388 aa13.74□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 PAPOLGQ9BWT3 736 aaKnown RBP13.74□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 AMBNQ9NP70 447 aa13.74□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 GNG8Q9UK08 70 aa13.74□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 NPTNQ9Y639 398 aa13.74□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 H0YAE9 185 aa13.73□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 ATP6V1B1P15313 513 aa13.73□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 MAP2K3P46734 347 aa13.73□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 ISL1P61371 349 aa13.73□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 RAB40BQ12829 278 aa13.73□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 SMN1Q16637 294 aaKnown RBP13.73□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 ZNF181Q2M3W8 571 aa13.73□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 CDONQ4KMG0 1287 aa13.73□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 TP53I3Q53FA7 332 aa13.73□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 C6orf52Q5T4I8 152 aa13.73□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 PRAMEF6Q5VXH4 476 aa13.73□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 ELMOD2Q8IZ81 293 aa13.73□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 OR8S1Q8NH09 359 aa13.73□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 ITFG2Q969R8 447 aa13.73□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 ERGIC1Q969X5 290 aa13.73□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 PPP1R14AQ96A00 147 aa13.73□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 MRPL48Q96GC5 212 aaKnown RBP13.73□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 FAM71F1Q96KD3 344 aaPredicted RBP13.73□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 GPR84Q9NQS5 396 aa13.73□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 MRPS18AQ9NVS2 196 aaKnown RBP13.73□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 RHBDD3Q9Y3P4 386 aa13.73□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 ISPDA4D126 451 aa13.72□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 LRRC30A6NM36 301 aa13.72□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 TMEM178BH3BS89 294 aa13.72□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 PTBP3O95758 552 aaKnown RBP13.72□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 FADS2O95864 444 aaKnown RBP13.72□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 CST4P01036 141 aa13.72□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 IGHV2-70P01814 119 aa13.72□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 IGHA1P01876 353 aa13.72□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 RBMXP38159 391 aaKnown RBP13.72□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 ACTA2P62736 377 aa13.72□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 ACTG2P63267 376 aa13.72□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 KLHL22Q53GT1 634 aa13.72□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 KCTD20Q7Z5Y7 419 aa13.72□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 CATSPERDQ86XM0 798 aa13.72□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 C8orf59Q8N0T1 100 aaPredicted RBP13.72□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 C1orf87Q8N0U7 546 aa13.72□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 PLPP7Q8NBV4 271 aa13.72□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 SEMA6DQ8NFY4 1073 aa13.72□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 OR52I1Q8NGK6 324 aa13.72□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 OR11L1Q8NGX0 322 aa13.72□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 Q8TCH9 128 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms