RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 OR6Q1Q8NGQ2 317 aa1.61□□□□□ -2.15
PTPN4-212ENST00000488896 NRBF2Q96F24 287 aa1.61□□□□□ -2.15
PTPN4-212ENST00000488896 DUSP21Q9H596 190 aa1.61□□□□□ -2.15
PTPN4-212ENST00000488896 TMEM38AQ9H6F2 299 aa1.61□□□□□ -2.15
PTPN4-212ENST00000488896 TRIM45Q9H8W5 580 aaPredicted RBP1.61□□□□□ -2.15
PTPN4-212ENST00000488896 ACP6Q9NPH0 428 aa1.61□□□□□ -2.15
PTPN4-212ENST00000488896 NMRK1Q9NWW6 199 aa1.61□□□□□ -2.15
PTPN4-212ENST00000488896 RWDD2AQ9UIY3 292 aa1.61□□□□□ -2.15
PTPN4-212ENST00000488896 COL22A1Q8NFW1 1626 aaPredicted RBP1.61□□□□□ -2.15
PTPN4-212ENST00000488896 CACNA1DQ01668 2161 aa1.6□□□□□ -2.15
PTPN4-212ENST00000488896 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP1.6□□□□□ -2.15
PTPN4-212ENST00000488896 ERLIN1O75477 346 aa1.6□□□□□ -2.15
PTPN4-212ENST00000488896 MYL2P10916 166 aa1.6□□□□□ -2.15
PTPN4-212ENST00000488896 HLA-DMAP28067 261 aa1.6□□□□□ -2.15
PTPN4-212ENST00000488896 GTF2E2P29084 291 aaKnown RBP1.6□□□□□ -2.15
PTPN4-212ENST00000488896 OTX1P32242 354 aaPredicted RBP1.6□□□□□ -2.15
PTPN4-212ENST00000488896 CD70P32970 193 aa1.6□□□□□ -2.15
PTPN4-212ENST00000488896 BMI1P35226 326 aa1.6□□□□□ -2.15
PTPN4-212ENST00000488896 ACOT2P49753 483 aa1.6□□□□□ -2.15
PTPN4-212ENST00000488896 KRTAP12-1P59990 96 aa1.6□□□□□ -2.15
PTPN4-212ENST00000488896 SLC9A3R2Q15599 337 aa1.6□□□□□ -2.15
PTPN4-212ENST00000488896 HSDL1Q3SXM5 330 aa1.6□□□□□ -2.15
PTPN4-212ENST00000488896 GCSAMLQ5JQS6 135 aa1.6□□□□□ -2.15
PTPN4-212ENST00000488896 CARD17Q5XLA6 110 aa1.6□□□□□ -2.15
PTPN4-212ENST00000488896 OR1L1Q8NH94 360 aa1.6□□□□□ -2.15
PTPN4-212ENST00000488896 PRRC1Q96M27 445 aa1.6□□□□□ -2.15
PTPN4-212ENST00000488896 TGS1Q96RS0 853 aaKnown RBP1.6□□□□□ -2.15
PTPN4-212ENST00000488896 PLIN2Q99541 437 aa1.6□□□□□ -2.15
PTPN4-212ENST00000488896 TMEM185BQ9H7F4 350 aa1.6□□□□□ -2.15
PTPN4-212ENST00000488896 SLC39A1Q9NY26 324 aa1.6□□□□□ -2.15
PTPN4-212ENST00000488896 COMMD3-BMI1R4GMX3 469 aa1.6□□□□□ -2.15
PTPN4-212ENST00000488896 LOXHD1Q8IVV2 1947 aa1.6□□□□□ -2.15
PTPN4-212ENST00000488896 A6NDN8 102 aa1.59□□□□□ -2.15
PTPN4-212ENST00000488896 OVOL1O14753 267 aa1.59□□□□□ -2.15
PTPN4-212ENST00000488896 TAAR5O14804 337 aa1.59□□□□□ -2.15
PTPN4-212ENST00000488896 SCO1O75880 301 aa1.59□□□□□ -2.15
PTPN4-212ENST00000488896 CD160O95971 181 aa1.59□□□□□ -2.15
PTPN4-212ENST00000488896 KRT14P02533 472 aa1.59□□□□□ -2.15
PTPN4-212ENST00000488896 PGA5P0DJD9 388 aa1.59□□□□□ -2.15
PTPN4-212ENST00000488896 EIF2S2P20042 333 aaKnown RBP1.59□□□□□ -2.15
PTPN4-212ENST00000488896 RAB4AP20338 218 aa1.59□□□□□ -2.15
PTPN4-212ENST00000488896 MRPL19P49406 292 aaKnown RBP1.59□□□□□ -2.15
PTPN4-212ENST00000488896 RAB7AP51149 207 aa1.59□□□□□ -2.15
PTPN4-212ENST00000488896 RPS15P62841 145 aaKnown RBP1.59□□□□□ -2.15
PTPN4-212ENST00000488896 ZFAND6Q6FIF0 208 aa1.59□□□□□ -2.15
PTPN4-212ENST00000488896 APOBEC3HQ6NTF7 200 aaKnown RBP1.59□□□□□ -2.15
PTPN4-212ENST00000488896 TTC23LQ6PF05 361 aa1.59□□□□□ -2.15
PTPN4-212ENST00000488896 RTL4Q6ZR62 310 aa1.59□□□□□ -2.15
PTPN4-212ENST00000488896 LY6G5BQ8NDX9 201 aa1.59□□□□□ -2.15
PTPN4-212ENST00000488896 HAUS1Q96CS2 278 aa1.59□□□□□ -2.15
PTPN4-212ENST00000488896 IGF2BP2-AS1Q96M15 143 aa1.59□□□□□ -2.15
PTPN4-212ENST00000488896 XPO6Q96QU8 1125 aaKnown RBP1.59□□□□□ -2.15
PTPN4-212ENST00000488896 UCK2Q9BZX2 261 aa1.59□□□□□ -2.15
PTPN4-212ENST00000488896 SLC7A5P2Q9GIP4 190 aa1.59□□□□□ -2.15
PTPN4-212ENST00000488896 FAM192AQ9GZU8 254 aa1.59□□□□□ -2.15
PTPN4-212ENST00000488896 DYRK4Q9NR20 520 aa1.59□□□□□ -2.15
PTPN4-212ENST00000488896 RAB23Q9ULC3 237 aa1.59□□□□□ -2.15
PTPN4-212ENST00000488896 TEX46H3BTG2 121 aa1.58□□□□□ -2.16
PTPN4-212ENST00000488896 CCDC22O60826 627 aa1.58□□□□□ -2.16
PTPN4-212ENST00000488896 CDH16O75309 829 aa1.58□□□□□ -2.16
PTPN4-212ENST00000488896 LSM8O95777 96 aaKnown RBP1.58□□□□□ -2.16
PTPN4-212ENST00000488896 TGM6O95932 706 aa1.58□□□□□ -2.16
PTPN4-212ENST00000488896 OXTP01178 125 aa1.58□□□□□ -2.16
PTPN4-212ENST00000488896 HBE1P02100 147 aa1.58□□□□□ -2.16
PTPN4-212ENST00000488896 PGA4P0DJD7 388 aa1.58□□□□□ -2.16
PTPN4-212ENST00000488896 PGA3P0DJD8 388 aa1.58□□□□□ -2.16
PTPN4-212ENST00000488896 CTRB1P17538 263 aa1.58□□□□□ -2.16
PTPN4-212ENST00000488896 USF1P22415 310 aaPredicted RBP1.58□□□□□ -2.16
PTPN4-212ENST00000488896 STOMP27105 288 aa1.58□□□□□ -2.16
PTPN4-212ENST00000488896 UQCRFS1P47985 274 aa1.58□□□□□ -2.16
PTPN4-212ENST00000488896 RAB9AP51151 201 aa1.58□□□□□ -2.16
PTPN4-212ENST00000488896 C21orf59P57076 290 aa1.58□□□□□ -2.16
PTPN4-212ENST00000488896 RGS8P57771 180 aaPredicted RBP1.58□□□□□ -2.16
PTPN4-212ENST00000488896 ZNF121P58317 390 aaPredicted RBP1.58□□□□□ -2.16
PTPN4-212ENST00000488896 SP6Q3SY56 376 aa1.58□□□□□ -2.16
PTPN4-212ENST00000488896 AMMECR1LQ6DCA0 310 aa1.58□□□□□ -2.16
PTPN4-212ENST00000488896 MORN3Q6PF18 240 aaPredicted RBP1.58□□□□□ -2.16
PTPN4-212ENST00000488896 TMEM220Q6QAJ8 160 aa1.58□□□□□ -2.16
PTPN4-212ENST00000488896 OPN5Q6U736 354 aa1.58□□□□□ -2.16
PTPN4-212ENST00000488896 SCD5Q86SK9 330 aa1.58□□□□□ -2.16
PTPN4-212ENST00000488896 TTC29Q8NA56 475 aaPredicted RBP1.58□□□□□ -2.16
PTPN4-212ENST00000488896 OR4C5Q8NGB2 326 aa1.58□□□□□ -2.16
PTPN4-212ENST00000488896 FAM81AQ8TBF8 368 aa1.58□□□□□ -2.16
PTPN4-212ENST00000488896 RXFP4Q8TDU9 374 aa1.58□□□□□ -2.16
PTPN4-212ENST00000488896 KCNS1Q96KK3 526 aa1.58□□□□□ -2.16
PTPN4-212ENST00000488896 CSPG4P5Q96PW8 444 aa1.58□□□□□ -2.16
PTPN4-212ENST00000488896 OR4K3Q96R72 315 aa1.58□□□□□ -2.16
PTPN4-212ENST00000488896 CHP1Q99653 195 aa1.58□□□□□ -2.16
PTPN4-212ENST00000488896 KCNS3Q9BQ31 491 aa1.58□□□□□ -2.16
PTPN4-212ENST00000488896 UQCC2Q9BRT2 126 aa1.58□□□□□ -2.16
PTPN4-212ENST00000488896 DSN1Q9H410 356 aa1.58□□□□□ -2.16
PTPN4-212ENST00000488896 ZNF442Q9H7R0 627 aa1.58□□□□□ -2.16
PTPN4-212ENST00000488896 GEMIN7Q9H840 131 aaKnown RBP1.58□□□□□ -2.16
PTPN4-212ENST00000488896 NLE1Q9NVX2 485 aaPredicted RBP1.58□□□□□ -2.16
PTPN4-212ENST00000488896 CLN6Q9NWW5 311 aa1.58□□□□□ -2.16
PTPN4-212ENST00000488896 LYARQ9NX58 379 aaKnown RBP1.58□□□□□ -2.16
PTPN4-212ENST00000488896 RRP15Q9Y3B9 282 aaKnown RBP1.58□□□□□ -2.16
PTPN4-212ENST00000488896 ZBED9Q6R2W3 1325 aa1.58□□□□□ -2.16
PTPN4-212ENST00000488896 UBN2Q6ZU65 1347 aa1.58□□□□□ -2.16
PTPN4-212ENST00000488896 BRCA1P38398 1863 aaKnown RBP1.58□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms