RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 A0A1W2PRQ8 180 aa12.49□□□□□ -0.41
MCF2L-228ENST00000487354 OR6C68A6NDL8 312 aa12.49□□□□□ -0.41
MCF2L-228ENST00000487354 GGT3PA6NGU5 568 aa12.49□□□□□ -0.41
MCF2L-228ENST00000487354 HIST1H1CP16403 213 aaKnown RBP12.49□□□□□ -0.41
MCF2L-228ENST00000487354 EEF1B2P24534 225 aaKnown RBP12.49□□□□□ -0.41
MCF2L-228ENST00000487354 RPS6KA3P51812 740 aa12.49□□□□□ -0.41
MCF2L-228ENST00000487354 TPTEP56180 551 aa12.49□□□□□ -0.41
MCF2L-228ENST00000487354 IKZF1Q13422 519 aa12.49□□□□□ -0.41
MCF2L-228ENST00000487354 DGCR6Q14129 220 aa12.49□□□□□ -0.41
MCF2L-228ENST00000487354 LY6EQ16553 131 aa12.49□□□□□ -0.41
MCF2L-228ENST00000487354 FOXB2Q5VYV0 432 aa12.49□□□□□ -0.41
MCF2L-228ENST00000487354 METTL21CQ5VZV1 264 aa12.49□□□□□ -0.41
MCF2L-228ENST00000487354 C11orf88Q6PI97 169 aa12.49□□□□□ -0.41
MCF2L-228ENST00000487354 SPERTQ8NA61 448 aa12.49□□□□□ -0.41
MCF2L-228ENST00000487354 RANBP3Q9H6Z4 567 aaPredicted RBP12.49□□□□□ -0.41
MCF2L-228ENST00000487354 RNPEPL1Q9HAU8 725 aa12.49□□□□□ -0.41
MCF2L-228ENST00000487354 RPRD1BQ9NQG5 326 aaKnown RBP12.49□□□□□ -0.41
MCF2L-228ENST00000487354 ENPP4Q9Y6X5 453 aa12.49□□□□□ -0.41
MCF2L-228ENST00000487354 A0A0G2JND7 137 aa12.48□□□□□ -0.41
MCF2L-228ENST00000487354 UNC119BA6NIH7 251 aa12.48□□□□□ -0.41
MCF2L-228ENST00000487354 BBIP1A8MTZ0 92 aa12.48□□□□□ -0.41
MCF2L-228ENST00000487354 K7EIL1 84 aa12.48□□□□□ -0.41
MCF2L-228ENST00000487354 BHLHE40O14503 412 aa12.48□□□□□ -0.41
MCF2L-228ENST00000487354 EDF1O60869 148 aaKnown RBP12.48□□□□□ -0.41
MCF2L-228ENST00000487354 ZNF682O95780 498 aa12.48□□□□□ -0.41
MCF2L-228ENST00000487354 PAHP00439 452 aa12.48□□□□□ -0.41
MCF2L-228ENST00000487354 CD28P10747 220 aa12.48□□□□□ -0.41
MCF2L-228ENST00000487354 ACSM1Q08AH1 577 aa12.48□□□□□ -0.41
MCF2L-228ENST00000487354 KLF10Q13118 480 aa12.48□□□□□ -0.41
MCF2L-228ENST00000487354 MICBQ29980 383 aa12.48□□□□□ -0.41
MCF2L-228ENST00000487354 NSUN5P1Q3KNT7 163 aa12.48□□□□□ -0.41
MCF2L-228ENST00000487354 ATPAF1Q5TC12 328 aaPredicted RBP12.48□□□□□ -0.41
MCF2L-228ENST00000487354 SMARCD3Q6STE5 483 aa12.48□□□□□ -0.41
MCF2L-228ENST00000487354 LYPD4Q6UWN0 246 aa12.48□□□□□ -0.41
MCF2L-228ENST00000487354 CMTM4Q8IZR5 234 aa12.48□□□□□ -0.41
MCF2L-228ENST00000487354 OR1M1Q8NGA1 313 aa12.48□□□□□ -0.41
MCF2L-228ENST00000487354 OR4C13Q8NGP0 309 aa12.48□□□□□ -0.41
MCF2L-228ENST00000487354 OR4K13Q8NH42 304 aa12.48□□□□□ -0.41
MCF2L-228ENST00000487354 PIFOQ8TCI5 191 aa12.48□□□□□ -0.41
MCF2L-228ENST00000487354 ZNRF4Q8WWF5 429 aa12.48□□□□□ -0.41
MCF2L-228ENST00000487354 SGCDQ92629 289 aa12.48□□□□□ -0.41
MCF2L-228ENST00000487354 SPSB4Q96A44 273 aa12.48□□□□□ -0.41
MCF2L-228ENST00000487354 ERMAPQ96PL5 475 aaPredicted RBP12.48□□□□□ -0.41
MCF2L-228ENST00000487354 SSX3Q99909 188 aa12.48□□□□□ -0.41
MCF2L-228ENST00000487354 TLNRD1Q9H1K6 362 aa12.48□□□□□ -0.41
MCF2L-228ENST00000487354 ZNF702PQ9H963 129 aa12.48□□□□□ -0.41
MCF2L-228ENST00000487354 SERTAD4Q9NUC0 356 aa12.48□□□□□ -0.41
MCF2L-228ENST00000487354 CXCR6O00574 342 aa12.47□□□□□ -0.41
MCF2L-228ENST00000487354 ARPC3O15145 178 aa12.47□□□□□ -0.41
MCF2L-228ENST00000487354 XPNPEP2O43895 674 aa12.47□□□□□ -0.41
MCF2L-228ENST00000487354 VSIG10L2P0DP72 767 aa12.47□□□□□ -0.41
MCF2L-228ENST00000487354 SLC2A1P11166 492 aa12.47□□□□□ -0.41
MCF2L-228ENST00000487354 MXRA7P84157 204 aa12.47□□□□□ -0.41
MCF2L-228ENST00000487354 HABP2Q14520 560 aaPredicted RBP12.47□□□□□ -0.41
MCF2L-228ENST00000487354 DGUOKQ16854 277 aa12.47□□□□□ -0.41
MCF2L-228ENST00000487354 SLC36A1Q7Z2H8 476 aa12.47□□□□□ -0.41
MCF2L-228ENST00000487354 LNX2Q8N448 690 aa12.47□□□□□ -0.41
MCF2L-228ENST00000487354 OR2AJ1Q8NGZ0 328 aa12.47□□□□□ -0.41
MCF2L-228ENST00000487354 OR2T6Q8NHC8 308 aa12.47□□□□□ -0.41
MCF2L-228ENST00000487354 C12orf43Q96C57 262 aaKnown RBP12.47□□□□□ -0.41
MCF2L-228ENST00000487354 DHRS1Q96LJ7 313 aa12.47□□□□□ -0.41
MCF2L-228ENST00000487354 GAFA1Q96PS6 74 aa12.47□□□□□ -0.41
MCF2L-228ENST00000487354 TMEM120AQ9BXJ8 343 aa12.47□□□□□ -0.41
MCF2L-228ENST00000487354 WDR13Q9H1Z4 485 aa12.47□□□□□ -0.41
MCF2L-228ENST00000487354 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.47□□□□□ -0.41
MCF2L-228ENST00000487354 C14orf119Q9NWQ9 140 aa12.47□□□□□ -0.41
MCF2L-228ENST00000487354 M0R1W7 72 aa12.46□□□□□ -0.41
MCF2L-228ENST00000487354 NDUFB3O43676 98 aa12.46□□□□□ -0.41
MCF2L-228ENST00000487354 SERPINA1P01009 418 aa12.46□□□□□ -0.41
MCF2L-228ENST00000487354 H1F0P07305 194 aaKnown RBP12.46□□□□□ -0.41
MCF2L-228ENST00000487354 LRRC75BQ2VPJ9 315 aa12.46□□□□□ -0.41
MCF2L-228ENST00000487354 SLC36A3Q495N2 470 aa12.46□□□□□ -0.41
MCF2L-228ENST00000487354 KLHL12Q53G59 568 aa12.46□□□□□ -0.41
MCF2L-228ENST00000487354 NCR3LG1Q68D85 454 aa12.46□□□□□ -0.41
MCF2L-228ENST00000487354 DRAM2Q6UX65 266 aa12.46□□□□□ -0.41
MCF2L-228ENST00000487354 ZNF788Q6ZQV5 615 aa12.46□□□□□ -0.41
MCF2L-228ENST00000487354 RRM2BQ7LG56 351 aa12.46□□□□□ -0.41
MCF2L-228ENST00000487354 SLC15A3Q8IY34 581 aa12.46□□□□□ -0.41
MCF2L-228ENST00000487354 SDR9C7Q8NEX9 313 aa12.46□□□□□ -0.41
MCF2L-228ENST00000487354 OR5T2Q8NGG2 359 aa12.46□□□□□ -0.41
MCF2L-228ENST00000487354 FANK1Q8TC84 345 aa12.46□□□□□ -0.41
MCF2L-228ENST00000487354 DYDC1Q8WWB3 177 aa12.46□□□□□ -0.41
MCF2L-228ENST00000487354 SPTSSAQ969W0 71 aa12.46□□□□□ -0.41
MCF2L-228ENST00000487354 ATP6V1G3Q96LB4 118 aa12.46□□□□□ -0.41
MCF2L-228ENST00000487354 DDOQ99489 341 aa12.46□□□□□ -0.41
MCF2L-228ENST00000487354 FGF23Q9GZV9 251 aaPredicted RBP12.46□□□□□ -0.41
MCF2L-228ENST00000487354 MEGF9Q9H1U4 602 aa12.46□□□□□ -0.41
MCF2L-228ENST00000487354 OR52D1Q9H346 318 aa12.46□□□□□ -0.41
MCF2L-228ENST00000487354 METTL8Q9H825 291 aaKnown RBP12.46□□□□□ -0.41
MCF2L-228ENST00000487354 NDUFAF4Q9P032 175 aa12.46□□□□□ -0.41
MCF2L-228ENST00000487354 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.45□□□□□ -0.42
MCF2L-228ENST00000487354 NME4O00746 187 aa12.45□□□□□ -0.42
MCF2L-228ENST00000487354 FBXO24O75426 580 aa12.45□□□□□ -0.42
MCF2L-228ENST00000487354 MPIG6BO95866 241 aa12.45□□□□□ -0.42
MCF2L-228ENST00000487354 RENP00797 406 aa12.45□□□□□ -0.42
MCF2L-228ENST00000487354 TROVE2P10155 538 aaKnown RBP eCLIP12.45□□□□□ -0.42
MCF2L-228ENST00000487354 FAM3AP98173 230 aa12.45□□□□□ -0.42
MCF2L-228ENST00000487354 FGD3Q5JSP0 725 aa12.45□□□□□ -0.42
MCF2L-228ENST00000487354 DPY19L4Q7Z388 723 aa12.45□□□□□ -0.42
MCF2L-228ENST00000487354 Q8N2B8 174 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms