RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 HBMQ6B0K9 141 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 FRMPD2BQ6IN97 320 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 LAIR2Q6ISS4 152 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 CD200R1LQ6Q8B3 271 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 ENPP6Q6UWR7 440 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 WASH2PQ6VEQ5 465 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 ABHD13Q7L211 337 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 LRRC70Q7Z2Q7 622 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 ACOT1Q86TX2 421 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 SNX29P2Q8IUI4 249 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 C11orf42Q8N5U0 333 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 ATP6V1C2Q8NEY4 427 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 OR2T35Q8NGX2 323 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 DNAJB3Q8WWF6 145 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 SELENOMQ8WWX9 145 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 RAB39BQ96DA2 213 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 IMP4Q96G21 291 aaKnown RBP4.34□□□□□ -1.71
USP40-213ENST00000483216 NARS2Q96I59 477 aaKnown RBP4.34□□□□□ -1.71
USP40-213ENST00000483216 FOPNLQ96NB1 174 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 ZNF607Q96SK3 696 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 SDHCQ99643 169 aaPredicted RBP4.34□□□□□ -1.71
USP40-213ENST00000483216 NKX6-2Q9C056 277 aaPredicted RBP4.34□□□□□ -1.71
USP40-213ENST00000483216 SLC38A1Q9H2H9 487 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 OR51M1Q9H341 326 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 LRRN3Q9H3W5 708 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 TMEM38AQ9H6F2 299 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 C11orf49Q9H6J7 331 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 PLSCR3Q9NRY6 295 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 TXNL4BQ9NX01 149 aaKnown RBP4.34□□□□□ -1.71
USP40-213ENST00000483216 DDIT4Q9NX09 232 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 VAPAQ9P0L0 249 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 Q9UF83 564 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 GINS2Q9Y248 185 aa4.34□□□□□ -1.71
USP40-213ENST00000483216 MRPS7Q9Y2R9 242 aaKnown RBP4.34□□□□□ -1.71
USP40-213ENST00000483216 PLXNA1Q9UIW2 1896 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 PLXNB2O15031 1838 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 A0A0X1KG70 313 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 KANTRA0A1W2PQU2 76 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 A0A1W2PRV1 198 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 C1orf196B1AJZ1 125 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 ZNF879B4DU55 563 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 DFFAO00273 331 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 SH2D1BO14796 132 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 PLA2G10O15496 165 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 TGOLN2O43493 480 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 GSTZ1O43708 216 aaPredicted RBP4.33□□□□□ -1.72
USP40-213ENST00000483216 GMFGO60234 142 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 LCMT2O60294 686 aaKnown RBP4.33□□□□□ -1.72
USP40-213ENST00000483216 TPST2O60704 377 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 ECI2O75521 394 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 POP7O75817 140 aaKnown RBP4.33□□□□□ -1.72
USP40-213ENST00000483216 GADD45GO95257 159 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 PRAMEF12O95522 483 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 PTHP01270 115 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 IFNA10P01566 189 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 SEMG1P04279 462 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 TCRBP04435 133 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 FABP1P07148 127 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 CXCL8P10145 99 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 MGMTP16455 207 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 NPR2P20594 1047 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 MAGP20916 626 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 CCR7P32248 378 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 CRYBB2P43320 205 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 RAB2AP61019 212 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 AP1S1P61966 158 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 RPS4XP62701 263 aaKnown RBP4.33□□□□□ -1.72
USP40-213ENST00000483216 RPL38P63173 70 aaKnown RBP4.33□□□□□ -1.72
USP40-213ENST00000483216 IGLV3-21P80748 117 aaPredicted RBP4.33□□□□□ -1.72
USP40-213ENST00000483216 SPIBQ01892 262 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 PAX2Q02962 417 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 C2orf80Q0P641 193 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 BIKQ13323 160 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 ZNF235Q14590 738 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 KIAA0040Q15053 153 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 PTGES3Q15185 160 aaKnown RBP4.33□□□□□ -1.72
USP40-213ENST00000483216 IRF4Q15306 451 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 TAF1AQ15573 450 aaPredicted RBP4.33□□□□□ -1.72
USP40-213ENST00000483216 ZNF79Q15937 498 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 NDUFAF6Q330K2 333 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 LAMTOR1Q6IAA8 161 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 RPL13AP3Q6NVV1 102 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 CNIH2Q6PI25 160 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 APOOLQ6UXV4 268 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 GID4Q8IVV7 300 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 UMODL1-AS1Q8N2C9 162 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 FTMTQ8N4E7 242 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 ZNF561Q8N587 486 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 ZNF557Q8N988 423 aaPredicted RBP4.33□□□□□ -1.72
USP40-213ENST00000483216 ZBTB44Q8NCP5 570 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 PXT1Q8NFP0 134 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 OR6K3Q8NGY3 331 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 OR52N1Q8NH53 320 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 NEIL3Q8TAT5 605 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 CXorf40AQ8TE69 158 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 CPNE4Q96A23 557 aaPredicted RBP4.33□□□□□ -1.72
USP40-213ENST00000483216 SMARCD1Q96GM5 515 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 SENP8Q96LD8 212 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 SIGLEC12Q96PQ1 595 aa4.33□□□□□ -1.72
USP40-213ENST00000483216 MED10Q9BTT4 135 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms