RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 TPTEP56180 551 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 KRTAP10-11P60412 298 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 MS4A2Q01362 244 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 DBPQ10586 325 aaPredicted RBP5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 GK3PQ14409 553 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 ZMYND11Q15326 602 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 MICAQ29983 383 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 RSPO1Q2MKA7 263 aaPredicted RBP5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 ZNF362Q5T0B9 420 aaPredicted RBP5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 MRPL21Q7Z2W9 205 aaKnown RBP5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 C1QL2Q7Z5L3 287 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 LRRC28Q86X40 367 aaPredicted RBP5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 MUC20Q8N307 709 aaPredicted RBP5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 LNX2Q8N448 690 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 SLC37A3Q8NCC5 494 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 BHLHE23Q8NDY6 225 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 OR2T33Q8NG76 320 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 OR10AD1Q8NGE0 317 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 OR8D4Q8NGM9 314 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 NANPQ8TBE9 248 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 ZNF418Q8TF45 676 aaPredicted RBP5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 NTN5Q8WTR8 489 aaPredicted RBP5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 SPTSSAQ969W0 71 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 CCDC124Q96CT7 223 aaKnown RBP5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 ZNF799Q96GE5 643 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 SIGLEC11Q96RL6 698 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 DDOQ99489 341 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 SLC30A2Q9BRI3 323 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 TSSK6Q9BXA6 273 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 DGCR6LQ9BY27 220 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 PLA2G12AQ9BZM1 189 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 C1orf21Q9H246 121 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 WDR76Q9H967 626 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 DDX28Q9NUL7 540 aaKnown RBP5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 TMEM100Q9NV29 134 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 ARMC1Q9NVT9 282 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 MRPL22Q9NWU5 206 aaKnown RBP5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 DCAF16Q9NXF7 216 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 NOP16Q9Y3C1 178 aaKnown RBP5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 U3KQV3 271 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 STAB1Q9NY15 2570 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 A0A1B0GWJ7 208 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 ARRDC5A6NEK1 342 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 TVP23AA6NH52 213 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 LRRC30A6NM36 301 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 RIIAD1A6NNX1 92 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 F5H5P2 479 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 H0YL77 283 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 TMEM178BH3BS89 294 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 ACOT8O14734 319 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 SOX14O95416 240 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 CST1P01037 141 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 IFNGP01579 166 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 SPARCP09486 303 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 T-ENOLP0DO92 83 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 ZNF3P17036 446 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 HOXB6P17509 224 aaKnown RBP5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 CPT2P23786 658 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 FMO3P31513 532 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 MDH2P40926 338 aaKnown RBP5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 RPS27P42677 84 aaKnown RBP5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 SLC6A9P48067 706 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 ENTPD1P49961 510 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 BLVRAP53004 296 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 SLC25A1P53007 311 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 RAD23AP54725 363 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 PPP1R8Q12972 351 aaKnown RBP5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 CRMP1Q14194 572 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 GK2Q14410 553 aaPredicted RBP5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 TAF13Q15543 124 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 ZNF181Q2M3W8 571 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 ESCO2Q56NI9 601 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 DRAM2Q6UX65 266 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 USP43Q70EL4 1123 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 PGAP1Q75T13 922 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 DCXRQ7Z4W1 244 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 NAA40Q86UY6 237 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 C1orf87Q8N0U7 546 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 LILRB2Q8N423 598 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 SEMA6DQ8NFY4 1073 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 OR10G2Q8NGC3 310 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 OR51L1Q8NGJ5 315 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 OR10S1Q8NGN2 331 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 OR9Q1Q8NGQ5 310 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 OR6K6Q8NGW6 343 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 OR4Q3Q8NH05 313 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 ZNF420Q8TAQ5 688 aaPredicted RBP5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 TEX47Q8TBZ9 253 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 ZFAND2BQ8WV99 257 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 SPRYD4Q8WW59 207 aaPredicted RBP5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 SLCO4A1Q96BD0 722 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 NIPSNAP1Q9BPW8 284 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 COPS4Q9BT78 406 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 THTPAQ9BU02 230 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 RBM4Q9BWF3 364 aaKnown RBP5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 CHID1Q9BWS9 393 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 NMNAT2Q9BZQ4 307 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 SLC22A4Q9H015 551 aa5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 PATZ1Q9HBE1 687 aaKnown RBP5.7□□□□□ -1.5
CCDC88A-213ENST00000476903 VNN3Q9NY84 501 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms