RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 HOXA4Q00056 320 aaPredicted RBP8.19□□□□□ -1.1
HDAC3-208ENST00000476739 MVKQ03426 396 aa8.19□□□□□ -1.1
HDAC3-208ENST00000476739 EGR3Q06889 387 aa8.19□□□□□ -1.1
HDAC3-208ENST00000476739 MED21Q13503 144 aa8.19□□□□□ -1.1
HDAC3-208ENST00000476739 SMN1Q16637 294 aaKnown RBP8.19□□□□□ -1.1
HDAC3-208ENST00000476739 HFEQ30201 348 aa8.19□□□□□ -1.1
HDAC3-208ENST00000476739 ZNF684Q5T5D7 378 aa8.19□□□□□ -1.1
HDAC3-208ENST00000476739 MEDAGQ5VYS4 303 aa8.19□□□□□ -1.1
HDAC3-208ENST00000476739 DEGS2Q6QHC5 323 aa8.19□□□□□ -1.1
HDAC3-208ENST00000476739 OR52H1Q8NGJ2 320 aa8.19□□□□□ -1.1
HDAC3-208ENST00000476739 SPRYD4Q8WW59 207 aaPredicted RBP8.19□□□□□ -1.1
HDAC3-208ENST00000476739 NRG4Q8WWG1 115 aa8.19□□□□□ -1.1
HDAC3-208ENST00000476739 RFKQ969G6 155 aa8.19□□□□□ -1.1
HDAC3-208ENST00000476739 LGALS12Q96DT0 336 aa8.19□□□□□ -1.1
HDAC3-208ENST00000476739 MEGF10Q96KG7 1140 aa8.19□□□□□ -1.1
HDAC3-208ENST00000476739 RDH12Q96NR8 316 aa8.19□□□□□ -1.1
HDAC3-208ENST00000476739 DIRC2Q96SL1 478 aa8.19□□□□□ -1.1
HDAC3-208ENST00000476739 EGLN1Q9GZT9 426 aa8.19□□□□□ -1.1
HDAC3-208ENST00000476739 PBOV1Q9GZY1 135 aa8.19□□□□□ -1.1
HDAC3-208ENST00000476739 OR10A2Q9H208 303 aa8.19□□□□□ -1.1
HDAC3-208ENST00000476739 PLGRKTQ9HBL7 147 aa8.19□□□□□ -1.1
HDAC3-208ENST00000476739 TMEM165Q9HC07 324 aa8.19□□□□□ -1.1
HDAC3-208ENST00000476739 GCM1Q9NP62 436 aa8.19□□□□□ -1.1
HDAC3-208ENST00000476739 G6PC2Q9NQR9 355 aa8.19□□□□□ -1.1
HDAC3-208ENST00000476739 IKZF2Q9UKS7 526 aa8.19□□□□□ -1.1
HDAC3-208ENST00000476739 ABCA2Q9BZC7 2435 aa8.19□□□□□ -1.1
HDAC3-208ENST00000476739 LOC100289279A0A1B0GTE1 492 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 PHYHO14832 338 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 CD5LO43866 347 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 ZNF254O75437 659 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 RPP14O95059 124 aaKnown RBP8.18□□□□□ -1.1
HDAC3-208ENST00000476739 IGLV3-1P01715 115 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 OR2T7P0C7T2 308 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 DBTP11182 482 aaKnown RBP8.18□□□□□ -1.1
HDAC3-208ENST00000476739 ZNF12P17014 697 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 TNFSF4P23510 183 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 ATP6V1E1P36543 226 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 PMELP40967 661 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 MTNR1AP48039 350 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 GSK3AP49840 483 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 RIDAP52758 137 aaKnown RBP8.18□□□□□ -1.1
HDAC3-208ENST00000476739 ADARB1P78563 741 aaKnown RBP8.18□□□□□ -1.1
HDAC3-208ENST00000476739 ZNF91Q05481 1191 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 POU4F2Q12837 409 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 OR8G1Q15617 311 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 OR8B8Q15620 311 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 MPPED2Q15777 294 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 TP53I3Q53FA7 332 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 ZNF691Q5VV52 312 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 PRAMEF6Q5VXH4 476 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 PACRGLQ8N7B6 248 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 ZNF540Q8NDQ6 660 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 ZNF555Q8NEP9 628 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 OR2T27Q8NH04 317 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 CLDND2Q8NHS1 167 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 CNIH3Q8TBE1 160 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 CYGBQ8WWM9 190 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 RNF166Q96A37 237 aaPredicted RBP8.18□□□□□ -1.1
HDAC3-208ENST00000476739 SIGLEC11Q96RL6 698 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 MNTQ99583 582 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 ARPC5LQ9BPX5 153 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 NIPAL2Q9H841 368 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 SP140LQ9H930 580 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 TMEM106BQ9NUM4 274 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 MRPL15Q9P015 296 aaKnown RBP8.18□□□□□ -1.1
HDAC3-208ENST00000476739 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP8.18□□□□□ -1.1
HDAC3-208ENST00000476739 SLC22A13Q9Y226 551 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 EXOGQ9Y2C4 368 aaKnown RBP8.18□□□□□ -1.1
HDAC3-208ENST00000476739 MYRFQ9Y2G1 1151 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 WIPI2Q9Y4P8 454 aa8.18□□□□□ -1.1
HDAC3-208ENST00000476739 ANK3Q12955 4377 aaKnown RBP8.18□□□□□ -1.1
HDAC3-208ENST00000476739 MALRD1Q5VYJ5 2156 aa8.17□□□□□ -1.1
HDAC3-208ENST00000476739 FN1P02751 2386 aaKnown RBP8.17□□□□□ -1.1
HDAC3-208ENST00000476739 FAM157AC9JC47 383 aa8.17□□□□□ -1.1
HDAC3-208ENST00000476739 CLDN25C9JDP6 229 aa8.17□□□□□ -1.1
HDAC3-208ENST00000476739 INAFM1C9JVW0 142 aa8.17□□□□□ -1.1
HDAC3-208ENST00000476739 ZNF205O95201 554 aa8.17□□□□□ -1.1
HDAC3-208ENST00000476739 CYB5R3P00387 301 aaPredicted RBP8.17□□□□□ -1.1
HDAC3-208ENST00000476739 TTRP02766 147 aa8.17□□□□□ -1.1
HDAC3-208ENST00000476739 GNAO1P09471 354 aa8.17□□□□□ -1.1
HDAC3-208ENST00000476739 ZNF16P17020 682 aaPredicted RBP8.17□□□□□ -1.1
HDAC3-208ENST00000476739 TNFRSF1AP19438 455 aa8.17□□□□□ -1.1
HDAC3-208ENST00000476739 DCTDP32321 178 aa8.17□□□□□ -1.1
HDAC3-208ENST00000476739 PSMB10P40306 273 aa8.17□□□□□ -1.1
HDAC3-208ENST00000476739 CD200P41217 278 aa8.17□□□□□ -1.1
HDAC3-208ENST00000476739 MMP16P51512 607 aa8.17□□□□□ -1.1
HDAC3-208ENST00000476739 CHN2P52757 468 aa8.17□□□□□ -1.1
HDAC3-208ENST00000476739 ISL1P61371 349 aa8.17□□□□□ -1.1
HDAC3-208ENST00000476739 IL5RAQ01344 420 aa8.17□□□□□ -1.1
HDAC3-208ENST00000476739 ZNF829Q3KNS6 432 aaPredicted RBP8.17□□□□□ -1.1
HDAC3-208ENST00000476739 DMRTC1Q5HYR2 192 aa8.17□□□□□ -1.1
HDAC3-208ENST00000476739 FAM201AQ5SY85 155 aa8.17□□□□□ -1.1
HDAC3-208ENST00000476739 LIPNQ5VXI9 398 aa8.17□□□□□ -1.1
HDAC3-208ENST00000476739 FOXB2Q5VYV0 432 aa8.17□□□□□ -1.1
HDAC3-208ENST00000476739 WDR86Q86TI4 376 aa8.17□□□□□ -1.1
HDAC3-208ENST00000476739 MOGAT3Q86VF5 341 aa8.17□□□□□ -1.1
HDAC3-208ENST00000476739 DHRSXQ8N5I4 330 aa8.17□□□□□ -1.1
HDAC3-208ENST00000476739 YIPF7Q8N8F6 280 aa8.17□□□□□ -1.1
HDAC3-208ENST00000476739 OR51E1Q8TCB6 317 aa8.17□□□□□ -1.1
HDAC3-208ENST00000476739 RORBQ92753 470 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms