RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 SH2D2AQ9NP31 389 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 HPF1Q9NWY4 346 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 ZNF224Q9NZL3 707 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 KIF25Q9UIL4 384 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 DKKL1Q9UK85 242 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 COLQQ9Y215 455 aaPredicted RBP7.87□□□□□ -1.15
SYNE1-217ENST00000466159 PLEKHA6Q9Y2H5 1048 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 NSG1A0A0A6YYJ2 146 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 A0A0J9YW62 118 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 OR5H14A6NHG9 310 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 ZSCAN5BA6NJL1 495 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 NPIPA2E9PIF3 369 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 NPIPA3F8WFD2 350 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 YKT6O15498 198 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 CRTAPO75718 401 aaPredicted RBP7.87□□□□□ -1.15
SYNE1-217ENST00000466159 RAD51DO75771 328 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 SCGNO76038 276 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 CHRM2P08172 466 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 NMBP08949 121 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 RPA2P15927 270 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 GSK3AP49840 483 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 LSM6P62312 80 aaKnown RBP7.87□□□□□ -1.15
SYNE1-217ENST00000466159 MC2RQ01718 297 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 RSPO1Q2MKA7 263 aaPredicted RBP7.87□□□□□ -1.15
SYNE1-217ENST00000466159 TRIM61Q5EBN2 209 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 C1QL2Q7Z5L3 287 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 LYG2Q86SG7 212 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 ZNF546Q86UE3 836 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 DTWD2Q8NBA8 298 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 OR9K2Q8NGE7 335 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 OR4K15Q8NH41 348 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 KCNG3Q8TAE7 436 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 TMEM54Q969K7 222 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 NABP1Q96AH0 204 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 RAB3CQ96E17 227 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 DMRTA2Q96SC8 542 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 TMEM59Q9BXS4 323 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 NELFAQ9H3P2 528 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 ZDBF2Q9HCK1 2354 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 KIAA1549Q9HCM3 1950 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 C9orf170A2RU37 121 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 TUBAL3A6NHL2 446 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 TEX46H3BTG2 121 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 B3GALNT1O75752 331 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 SPDEFO95238 335 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 CD8AP01732 235 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 IFNA6P05013 189 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 DBHP09172 617 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 AKR1C4P17516 323 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 MPZP25189 248 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 CTSSP25774 331 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 MPGP29372 298 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 AVPR2P30518 371 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 MLF1P58340 268 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 RPS18P62269 152 aaKnown RBP7.86□□□□□ -1.15
SYNE1-217ENST00000466159 IL13RA1P78552 427 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 C10orf128Q5T292 105 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 ZNF660Q6AZW8 331 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-217ENST00000466159 CRIP3Q6Q6R5 217 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 OR2W3Q7Z3T1 314 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 MAML2Q8IZL2 1156 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-217ENST00000466159 TMEM123Q8N131 208 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 ZIC4Q8N9L1 334 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 GJC3Q8NFK1 279 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 LRRC20Q8TCA0 184 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 SSC4DQ8WTU2 575 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 SCARB1Q8WTV0 552 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 CASTOR1Q8WTX7 329 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 RBPMSQ93062 196 aaKnown RBP7.86□□□□□ -1.15
SYNE1-217ENST00000466159 ARHGAP5-AS1Q96IT6 56 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 IER2Q9BTL4 223 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 PDCD10Q9BUL8 212 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 SRXN1Q9BYN0 137 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 REG4Q9BYZ8 158 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 SMOC1Q9H4F8 434 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 SLC39A1Q9NY26 324 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 NCKAP5O14513 1909 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 A0A0G2JMM0 328 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 A0A1W2PPB8 328 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 A0A1W2PRS3 328 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 KIR3DP1A8MWS1 328 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 FAM25EA8MYX2 175 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 DHHO43323 396 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 EIF1BO60739 113 aaKnown RBP7.86□□□□□ -1.15
SYNE1-217ENST00000466159 HIST1H1DP16402 221 aaKnown RBP7.86□□□□□ -1.15
SYNE1-217ENST00000466159 VAMP1P23763 118 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 TRA2AQ13595 282 aaKnown RBP eCLIP7.86□□□□□ -1.15
SYNE1-217ENST00000466159 GK2Q14410 553 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-217ENST00000466159 KISS1Q15726 138 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 MICBQ29980 383 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 RGS7BPQ6MZT1 257 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-217ENST00000466159 NAXDQ8IW45 347 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 ZDHHC22Q8N966 263 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 MARCH1Q8TCQ1 289 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 ASB13Q8WXK3 278 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 NTNG2Q96CW9 530 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 DHRS9Q9BPW9 319 aa7.86□□□□□ -1.15
SYNE1-217ENST00000466159 NUDT16L1Q9BRJ7 211 aaKnown RBP7.86□□□□□ -1.15
SYNE1-217ENST00000466159 hCG_1807616A0A1W2PRN6 198 aa7.85□□□□□ -1.15
SYNE1-217ENST00000466159 EFSO43281 561 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms