RNA–Protein interactions for RNA: ENST00000455883.2

CSMD3-204, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 12,485 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-204ENST00000455883 PTPRBP23467 1997 aa4.75□□□□□ -1.65
CSMD3-204ENST00000455883 MEIKINA0A087WXM9 373 aa4.75□□□□□ -1.65
CSMD3-204ENST00000455883 SEC11BP0C7V7 166 aa4.75□□□□□ -1.65
CSMD3-204ENST00000455883 MMP11P24347 488 aa4.75□□□□□ -1.65
CSMD3-204ENST00000455883 MRPL2Q5T653 305 aaKnown RBP4.75□□□□□ -1.65
CSMD3-204ENST00000455883 ALKAL2Q6UX46 152 aa4.75□□□□□ -1.65
CSMD3-204ENST00000455883 DEFB128Q7Z7B8 93 aa4.75□□□□□ -1.65
CSMD3-204ENST00000455883 IL22RA1Q8N6P7 574 aa4.75□□□□□ -1.65
CSMD3-204ENST00000455883 DMBX1Q8NFW5 382 aa4.75□□□□□ -1.65
CSMD3-204ENST00000455883 OR4F15Q8NGB8 312 aa4.75□□□□□ -1.65
CSMD3-204ENST00000455883 OR2T10Q8NGZ9 312 aa4.75□□□□□ -1.65
CSMD3-204ENST00000455883 CNIH4Q9P003 139 aa4.75□□□□□ -1.65
CSMD3-204ENST00000455883 ZNF256Q9Y2P7 627 aaPredicted RBP4.75□□□□□ -1.65
CSMD3-204ENST00000455883 NOSIPQ9Y314 301 aaKnown RBP4.75□□□□□ -1.65
CSMD3-204ENST00000455883 CCSO14618 274 aa4.75□□□□□ -1.65
CSMD3-204ENST00000455883 HOXD13P35453 343 aa4.75□□□□□ -1.65
CSMD3-204ENST00000455883 SLC6A12P48065 614 aa4.75□□□□□ -1.65
CSMD3-204ENST00000455883 PXNP49023 591 aaPredicted RBP4.75□□□□□ -1.65
CSMD3-204ENST00000455883 RELBQ01201 579 aa4.75□□□□□ -1.65
CSMD3-204ENST00000455883 PIN1Q13526 163 aaPredicted RBP4.75□□□□□ -1.65
CSMD3-204ENST00000455883 TMEM38BQ9NVV0 291 aa4.75□□□□□ -1.65
CSMD3-204ENST00000455883 MTFP1Q9UDX5 166 aa4.75□□□□□ -1.65
CSMD3-204ENST00000455883 A0A087X0M5 115 aa4.75□□□□□ -1.65
CSMD3-204ENST00000455883 A0A1B0GX30 115 aa4.75□□□□□ -1.65
CSMD3-204ENST00000455883 SLC31A1O15431 190 aa4.75□□□□□ -1.65
CSMD3-204ENST00000455883 PHF1O43189 567 aaPredicted RBP4.75□□□□□ -1.65
CSMD3-204ENST00000455883 CCNOP22674 350 aa4.75□□□□□ -1.65
CSMD3-204ENST00000455883 GPM6AP51674 278 aa4.75□□□□□ -1.65
CSMD3-204ENST00000455883 LCN2P80188 198 aa4.75□□□□□ -1.65
CSMD3-204ENST00000455883 CT83Q5H943 113 aa4.75□□□□□ -1.65
CSMD3-204ENST00000455883 SFRP4Q6FHJ7 346 aaPredicted RBP4.75□□□□□ -1.65
CSMD3-204ENST00000455883 SAMD7Q7Z3H4 446 aa4.75□□□□□ -1.65
CSMD3-204ENST00000455883 WDR31Q8NA23 367 aa4.75□□□□□ -1.65
CSMD3-204ENST00000455883 GPX7Q96SL4 187 aaPredicted RBP4.75□□□□□ -1.65
CSMD3-204ENST00000455883 SLIRPQ9GZT3 109 aaKnown RBP4.75□□□□□ -1.65
CSMD3-204ENST00000455883 RBKSQ9H477 322 aa4.75□□□□□ -1.65
CSMD3-204ENST00000455883 SPATA6Q9NWH7 488 aaPredicted RBP4.75□□□□□ -1.65
CSMD3-204ENST00000455883 GAB2Q9UQC2 676 aa4.75□□□□□ -1.65
CSMD3-204ENST00000455883 SLC27A5Q9Y2P5 690 aa4.75□□□□□ -1.65
CSMD3-204ENST00000455883 CSAG2Q9Y5P2 127 aa4.75□□□□□ -1.65
CSMD3-204ENST00000455883 OR52A4PA6NMU1 304 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 CST5P28325 142 aaPredicted RBP4.74□□□□□ -1.65
CSMD3-204ENST00000455883 CSNK1EP49674 416 aaKnown RBP4.74□□□□□ -1.65
CSMD3-204ENST00000455883 EMP3P54852 163 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 RNPS1Q15287 305 aaKnown RBP4.74□□□□□ -1.65
CSMD3-204ENST00000455883 CD226Q15762 336 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 ETFDHQ16134 617 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 C9orf131Q5VYM1 1079 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 SPRYD7Q5W111 196 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 NRG4Q8WWG1 115 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 ZCCHC14Q8WYQ9 949 aaKnown RBP4.74□□□□□ -1.65
CSMD3-204ENST00000455883 PTP4A1Q93096 173 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 GRAMD2BQ96HH9 432 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 BEX2Q9BXY8 128 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 BEX1Q9HBH7 125 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 CTNNBIP1Q9NSA3 81 aaPredicted RBP4.74□□□□□ -1.65
CSMD3-204ENST00000455883 CA14Q9ULX7 337 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 SIRPB1O00241 398 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 ARNTP27540 789 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 SLC10A2Q12908 348 aaPredicted RBP4.74□□□□□ -1.65
CSMD3-204ENST00000455883 CEBPEQ15744 281 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 SYPL2Q5VXT5 272 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 Q6ZVU0 165 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 PPP1R1CQ8WVI7 109 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 APOBEC3DQ96AK3 386 aaPredicted RBP4.74□□□□□ -1.65
CSMD3-204ENST00000455883 IGSF21Q96ID5 467 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 FOXN4Q96NZ1 517 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 PTDSS2Q9BVG9 487 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 RBM24Q9BX46 236 aaKnown RBP4.74□□□□□ -1.65
CSMD3-204ENST00000455883 RABAC1Q9UI14 185 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 A0A0G2JLW4 131 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 BUD23O43709 281 aaKnown RBP4.74□□□□□ -1.65
CSMD3-204ENST00000455883 OR4Q2P0C623 313 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 DEFA4P12838 97 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 HLA-GP17693 338 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 POU3F2P20265 443 aaPredicted RBP4.74□□□□□ -1.65
CSMD3-204ENST00000455883 BLVRBP30043 206 aaPredicted RBP4.74□□□□□ -1.65
CSMD3-204ENST00000455883 SSR4P51571 173 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 RPS20P60866 119 aaKnown RBP4.74□□□□□ -1.65
CSMD3-204ENST00000455883 ARHGAP11BQ3KRB8 267 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 SMUG1Q53HV7 270 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 OR5M9Q8NGP3 310 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 FAM210BQ96KR6 192 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 ACER3Q9NUN7 267 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 ANXA10Q9UJ72 324 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 DSCAML1Q8TD84 2053 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 ZNF816-ZNF321PA0A0X1KG74 233 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 OR2T8A6NH00 312 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 SEMA7AO75326 666 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 MRPL3P09001 348 aaKnown RBP4.74□□□□□ -1.65
CSMD3-204ENST00000455883 ACAA1P09110 424 aaPredicted RBP4.74□□□□□ -1.65
CSMD3-204ENST00000455883 INHBBP09529 407 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 GABRR1P24046 479 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 HOXD11P31277 338 aaPredicted RBP4.74□□□□□ -1.65
CSMD3-204ENST00000455883 PTTG1IPP53801 180 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 EXOSC2Q13868 293 aaKnown RBP4.74□□□□□ -1.65
CSMD3-204ENST00000455883 TMEM241Q24JQ0 296 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 RPEL1Q2QD12 228 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 Q6AWC8 147 aa4.74□□□□□ -1.65
CSMD3-204ENST00000455883 VASNQ6EMK4 673 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms