RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 APOFQ13790 326 aa17.75■□□□□ 0.43
HMGB3-205ENST00000455596 ARMCX4Q5H9R4 360 aa17.75■□□□□ 0.43
HMGB3-205ENST00000455596 DCDC5Q6ZRR9 648 aa17.75■□□□□ 0.43
HMGB3-205ENST00000455596 USP43Q70EL4 1123 aa17.75■□□□□ 0.43
HMGB3-205ENST00000455596 C19orf18Q8NEA5 215 aa17.75■□□□□ 0.43
HMGB3-205ENST00000455596 OR8S1Q8NH09 359 aa17.75■□□□□ 0.43
HMGB3-205ENST00000455596 SUCNR1Q9BXA5 334 aa17.75■□□□□ 0.43
HMGB3-205ENST00000455596 hCG_38984A0A1B0GV85 526 aa17.74■□□□□ 0.43
HMGB3-205ENST00000455596 GRPP07492 148 aa17.74■□□□□ 0.43
HMGB3-205ENST00000455596 ESRRGP62508 458 aa17.74■□□□□ 0.43
HMGB3-205ENST00000455596 PTGES3Q15185 160 aaKnown RBP17.74■□□□□ 0.43
HMGB3-205ENST00000455596 ATP6AP1Q15904 470 aa17.74■□□□□ 0.43
HMGB3-205ENST00000455596 GFOD2Q3B7J2 385 aa17.74■□□□□ 0.43
HMGB3-205ENST00000455596 C1orf146Q5VVC0 180 aa17.74■□□□□ 0.43
HMGB3-205ENST00000455596 BPIFB2Q8N4F0 458 aa17.74■□□□□ 0.43
HMGB3-205ENST00000455596 ZFAND2BQ8WV99 257 aa17.74■□□□□ 0.43
HMGB3-205ENST00000455596 JMJD8Q96S16 334 aa17.74■□□□□ 0.43
HMGB3-205ENST00000455596 PRRG3Q9BZD7 231 aa17.74■□□□□ 0.43
HMGB3-205ENST00000455596 RGCCQ9H4X1 137 aa17.74■□□□□ 0.43
HMGB3-205ENST00000455596 KRT84Q9NSB2 600 aa17.74■□□□□ 0.43
HMGB3-205ENST00000455596 ZNF319Q9P2F9 582 aa17.74■□□□□ 0.43
HMGB3-205ENST00000455596 LAMP5Q9UJQ1 280 aa17.74■□□□□ 0.43
HMGB3-205ENST00000455596 A6NLC8 198 aa17.73■□□□□ 0.43
HMGB3-205ENST00000455596 G3V2T6 193 aa17.73■□□□□ 0.43
HMGB3-205ENST00000455596 FPR2P25090 351 aa17.73■□□□□ 0.43
HMGB3-205ENST00000455596 FASP25445 335 aa17.73■□□□□ 0.43
HMGB3-205ENST00000455596 PITPNBP48739 271 aa17.73■□□□□ 0.43
HMGB3-205ENST00000455596 GSK3AP49840 483 aa17.73■□□□□ 0.43
HMGB3-205ENST00000455596 HILS1P60008 231 aa17.73■□□□□ 0.43
HMGB3-205ENST00000455596 KCNJ8Q15842 424 aa17.73■□□□□ 0.43
HMGB3-205ENST00000455596 LCN1P1Q5VSP4 162 aa17.73■□□□□ 0.43
HMGB3-205ENST00000455596 LYPD2Q6UXB3 125 aa17.73■□□□□ 0.43
HMGB3-205ENST00000455596 BTNL3Q6UXE8 466 aa17.73■□□□□ 0.43
HMGB3-205ENST00000455596 LRRN1Q6UXK5 716 aa17.73■□□□□ 0.43
HMGB3-205ENST00000455596 BOLLQ8N9W6 283 aaKnown RBP17.73■□□□□ 0.43
HMGB3-205ENST00000455596 CSNK2A3Q8NEV1 391 aa17.73■□□□□ 0.43
HMGB3-205ENST00000455596 SLC6A7Q99884 636 aa17.73■□□□□ 0.43
HMGB3-205ENST00000455596 YIPF3Q9GZM5 350 aa17.73■□□□□ 0.43
HMGB3-205ENST00000455596 NIPAL2Q9H841 368 aa17.73■□□□□ 0.43
HMGB3-205ENST00000455596 C1orf123Q9NWV4 160 aa17.73■□□□□ 0.43
HMGB3-205ENST00000455596 KLHDC2Q9Y2U9 406 aa17.73■□□□□ 0.43
HMGB3-205ENST00000455596 AP4S1Q9Y587 144 aa17.73■□□□□ 0.43
HMGB3-205ENST00000455596 LGALS8O00214 317 aa17.72■□□□□ 0.43
HMGB3-205ENST00000455596 ALOX5APP20292 161 aa17.72■□□□□ 0.43
HMGB3-205ENST00000455596 PAX8Q06710 450 aa17.72■□□□□ 0.43
HMGB3-205ENST00000455596 SNCBQ16143 134 aa17.72■□□□□ 0.43
HMGB3-205ENST00000455596 SFRP4Q6FHJ7 346 aaPredicted RBP17.72■□□□□ 0.43
HMGB3-205ENST00000455596 KRT77Q7Z794 578 aa17.72■□□□□ 0.43
HMGB3-205ENST00000455596 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP17.72■□□□□ 0.43
HMGB3-205ENST00000455596 DUS3LQ96G46 650 aaKnown RBP17.72■□□□□ 0.43
HMGB3-205ENST00000455596 TEAD3Q99594 435 aa17.72■□□□□ 0.43
HMGB3-205ENST00000455596 TRIM36Q9NQ86 728 aa17.72■□□□□ 0.43
HMGB3-205ENST00000455596 CLN8Q9UBY8 286 aa17.72■□□□□ 0.43
HMGB3-205ENST00000455596 NUP50Q9UKX7 468 aa17.72■□□□□ 0.43
HMGB3-205ENST00000455596 LRP12Q9Y561 859 aa17.72■□□□□ 0.43
HMGB3-205ENST00000455596 IGHV2-70DA0A0C4DH43 119 aa17.71■□□□□ 0.43
HMGB3-205ENST00000455596 hCG_1807616A0A1W2PRN6 198 aa17.71■□□□□ 0.43
HMGB3-205ENST00000455596 TRIM77I1YAP6 450 aa17.71■□□□□ 0.43
HMGB3-205ENST00000455596 PHYHO14832 338 aa17.71■□□□□ 0.43
HMGB3-205ENST00000455596 FCGR1AP12314 374 aa17.71■□□□□ 0.43
HMGB3-205ENST00000455596 CD80P33681 288 aa17.71■□□□□ 0.43
HMGB3-205ENST00000455596 GNALP38405 381 aa17.71■□□□□ 0.43
HMGB3-205ENST00000455596 PSMA6P60900 246 aaKnown RBP17.71■□□□□ 0.43
HMGB3-205ENST00000455596 HOXA4Q00056 320 aaPredicted RBP17.71■□□□□ 0.43
HMGB3-205ENST00000455596 PAX2Q02962 417 aa17.71■□□□□ 0.43
HMGB3-205ENST00000455596 OR8B8Q15620 311 aa17.71■□□□□ 0.43
HMGB3-205ENST00000455596 KCTD18Q6PI47 426 aaPredicted RBP17.71■□□□□ 0.43
HMGB3-205ENST00000455596 ZNF826PQ6ZT77 177 aa17.71■□□□□ 0.43
HMGB3-205ENST00000455596 ZDHHC13Q8IUH4 622 aa17.71■□□□□ 0.43
HMGB3-205ENST00000455596 FTMTQ8N4E7 242 aa17.71■□□□□ 0.43
HMGB3-205ENST00000455596 RAB40AQ8WXH6 277 aa17.71■□□□□ 0.43
HMGB3-205ENST00000455596 C22orf15Q8WYQ4 148 aa17.71■□□□□ 0.43
HMGB3-205ENST00000455596 PAPOLGQ9BWT3 736 aaKnown RBP17.71■□□□□ 0.43
HMGB3-205ENST00000455596 TRAV38-1A0A0B4J264 116 aa17.7■□□□□ 0.42
HMGB3-205ENST00000455596 CCDC182A6NF36 153 aa17.7■□□□□ 0.42
HMGB3-205ENST00000455596 OOEPA6NGQ2 149 aa17.7■□□□□ 0.42
HMGB3-205ENST00000455596 C3orf80F5H4A9 247 aa17.7■□□□□ 0.42
HMGB3-205ENST00000455596 PRKYO43930 277 aa17.7■□□□□ 0.42
HMGB3-205ENST00000455596 MITFO75030 526 aaPredicted RBP17.7■□□□□ 0.42
HMGB3-205ENST00000455596 MRPL3P09001 348 aaKnown RBP17.7■□□□□ 0.42
HMGB3-205ENST00000455596 PSMB10P40306 273 aa17.7■□□□□ 0.42
HMGB3-205ENST00000455596 NPY4RP50391 375 aa17.7■□□□□ 0.42
HMGB3-205ENST00000455596 HCCSP53701 268 aa17.7■□□□□ 0.42
HMGB3-205ENST00000455596 WDR25Q64LD2 544 aaPredicted RBP17.7■□□□□ 0.42
HMGB3-205ENST00000455596 AMIGO2Q86SJ2 522 aa17.7■□□□□ 0.42
HMGB3-205ENST00000455596 GCSAMQ8N6F7 178 aa17.7■□□□□ 0.42
HMGB3-205ENST00000455596 GABARAPL1Q9H0R8 117 aa17.7■□□□□ 0.42
HMGB3-205ENST00000455596 ZNF391Q9UJN7 358 aa17.7■□□□□ 0.42
HMGB3-205ENST00000455596 DNHD1Q96M86 4753 aa17.7■□□□□ 0.42
HMGB3-205ENST00000455596 ANXA2P2A6NMY6 339 aa17.69■□□□□ 0.42
HMGB3-205ENST00000455596 NDUFA2O43678 99 aa17.69■□□□□ 0.42
HMGB3-205ENST00000455596 CIB2O75838 187 aa17.69■□□□□ 0.42
HMGB3-205ENST00000455596 PPIAL4GP0DN37 164 aa17.69■□□□□ 0.42
HMGB3-205ENST00000455596 KLF17Q5JT82 389 aaPredicted RBP17.69■□□□□ 0.42
HMGB3-205ENST00000455596 KDM4DQ6B0I6 523 aa17.69■□□□□ 0.42
HMGB3-205ENST00000455596 DEGS2Q6QHC5 323 aa17.69■□□□□ 0.42
HMGB3-205ENST00000455596 ZNF841Q6ZN19 808 aa17.69■□□□□ 0.42
HMGB3-205ENST00000455596 WDR86Q86TI4 376 aa17.69■□□□□ 0.42
HMGB3-205ENST00000455596 OR1M1Q8NGA1 313 aa17.69■□□□□ 0.42
HMGB3-205ENST00000455596 OR8B12Q8NGG6 310 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms