RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 OGFRL1Q5TC84 451 aaPredicted RBP15.75■□□□□ 0.11
SHH-203ENST00000435425 DHRSXQ8N5I4 330 aa15.75■□□□□ 0.11
SHH-203ENST00000435425 MSI2Q96DH6 328 aaKnown RBP15.75■□□□□ 0.11
SHH-203ENST00000435425 FAM71F1Q96KD3 344 aaPredicted RBP15.75■□□□□ 0.11
SHH-203ENST00000435425 SIGLEC11Q96RL6 698 aa15.75■□□□□ 0.11
SHH-203ENST00000435425 PPP1R3EQ9H7J1 279 aa15.75■□□□□ 0.11
SHH-203ENST00000435425 NPTNQ9Y639 398 aa15.75■□□□□ 0.11
SHH-203ENST00000435425 R4GMQ9 66 aa15.75■□□□□ 0.11
SHH-203ENST00000435425 ABCA1O95477 2261 aa15.75■□□□□ 0.11
SHH-203ENST00000435425 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP15.74■□□□□ 0.11
SHH-203ENST00000435425 LOC100289279A0A1B0GTE1 492 aa15.74■□□□□ 0.11
SHH-203ENST00000435425 A0A1B0GWJ7 208 aa15.74■□□□□ 0.11
SHH-203ENST00000435425 DAPL1A0PJW8 107 aa15.74■□□□□ 0.11
SHH-203ENST00000435425 METTL15A6NJ78 407 aa15.74■□□□□ 0.11
SHH-203ENST00000435425 ACOD1A6NK06 481 aa15.74■□□□□ 0.11
SHH-203ENST00000435425 CASQ2O14958 399 aaPredicted RBP15.74■□□□□ 0.11
SHH-203ENST00000435425 CYB5R3P00387 301 aaPredicted RBP15.74■□□□□ 0.11
SHH-203ENST00000435425 GRPP07492 148 aa15.74■□□□□ 0.11
SHH-203ENST00000435425 DBTP11182 482 aaKnown RBP15.74■□□□□ 0.11
SHH-203ENST00000435425 GNALP38405 381 aa15.74■□□□□ 0.11
SHH-203ENST00000435425 CD200P41217 278 aa15.74■□□□□ 0.11
SHH-203ENST00000435425 MMP16P51512 607 aa15.74■□□□□ 0.11
SHH-203ENST00000435425 ZNF85Q03923 595 aa15.74■□□□□ 0.11
SHH-203ENST00000435425 ZNF91Q05481 1191 aa15.74■□□□□ 0.11
SHH-203ENST00000435425 TP53I3Q53FA7 332 aa15.74■□□□□ 0.11
SHH-203ENST00000435425 C6orf52Q5T4I8 152 aa15.74■□□□□ 0.11
SHH-203ENST00000435425 BCL2L15Q5TBC7 163 aa15.74■□□□□ 0.11
SHH-203ENST00000435425 TTC23Q5W5X9 447 aa15.74■□□□□ 0.11
SHH-203ENST00000435425 CSNK2A3Q8NEV1 391 aa15.74■□□□□ 0.11
SHH-203ENST00000435425 OR8S1Q8NH09 359 aa15.74■□□□□ 0.11
SHH-203ENST00000435425 OR51E1Q8TCB6 317 aa15.74■□□□□ 0.11
SHH-203ENST00000435425 HPS1Q92902 700 aa15.74■□□□□ 0.11
SHH-203ENST00000435425 LGALS12Q96DT0 336 aa15.74■□□□□ 0.11
SHH-203ENST00000435425 PAPOLGQ9BWT3 736 aaKnown RBP15.74■□□□□ 0.11
SHH-203ENST00000435425 GPR84Q9NQS5 396 aa15.74■□□□□ 0.11
SHH-203ENST00000435425 GNG8Q9UK08 70 aa15.74■□□□□ 0.11
SHH-203ENST00000435425 OR52A1Q9UKL2 312 aa15.74■□□□□ 0.11
SHH-203ENST00000435425 RHBDD3Q9Y3P4 386 aa15.74■□□□□ 0.11
SHH-203ENST00000435425 H0YHG0 523 aa15.73■□□□□ 0.11
SHH-203ENST00000435425 SRSF10O75494 262 aaKnown RBP15.73■□□□□ 0.11
SHH-203ENST00000435425 ZNF205O95201 554 aa15.73■□□□□ 0.11
SHH-203ENST00000435425 TGFAP01135 160 aa15.73■□□□□ 0.11
SHH-203ENST00000435425 ACKR3P25106 362 aa15.73■□□□□ 0.11
SHH-203ENST00000435425 PSMB10P40306 273 aa15.73■□□□□ 0.11
SHH-203ENST00000435425 PMELP40967 661 aa15.73■□□□□ 0.11
SHH-203ENST00000435425 SLC34A1Q06495 639 aa15.73■□□□□ 0.11
SHH-203ENST00000435425 MPPED2Q15777 294 aa15.73■□□□□ 0.11
SHH-203ENST00000435425 ODF4Q2M2E3 257 aa15.73■□□□□ 0.11
SHH-203ENST00000435425 ZNF691Q5VV52 312 aa15.73■□□□□ 0.11
SHH-203ENST00000435425 LIPNQ5VXI9 398 aa15.73■□□□□ 0.11
SHH-203ENST00000435425 APH1BQ8WW43 257 aa15.73■□□□□ 0.11
SHH-203ENST00000435425 PIGCQ92535 297 aa15.73■□□□□ 0.11
SHH-203ENST00000435425 GAL3ST1Q99999 423 aa15.73■□□□□ 0.11
SHH-203ENST00000435425 LPAR2Q9HBW0 351 aa15.73■□□□□ 0.11
SHH-203ENST00000435425 UBAP1Q9NZ09 502 aa15.73■□□□□ 0.11
SHH-203ENST00000435425 NUFIP1Q9UHK0 495 aaKnown RBP15.73■□□□□ 0.11
SHH-203ENST00000435425 ZNF391Q9UJN7 358 aa15.73■□□□□ 0.11
SHH-203ENST00000435425 SLC22A13Q9Y226 551 aa15.73■□□□□ 0.11
SHH-203ENST00000435425 EXOGQ9Y2C4 368 aaKnown RBP15.73■□□□□ 0.11
SHH-203ENST00000435425 SNX5Q9Y5X3 404 aa15.73■□□□□ 0.11
SHH-203ENST00000435425 ZANQ9Y493 2812 aa15.72■□□□□ 0.11
SHH-203ENST00000435425 CSPG4Q6UVK1 2322 aa15.72■□□□□ 0.11
SHH-203ENST00000435425 A0A0U1RQV5 110 aa15.72■□□□□ 0.11
SHH-203ENST00000435425 ZNF850A8MQ14 1090 aa15.72■□□□□ 0.11
SHH-203ENST00000435425 A8MV72 311 aaPredicted RBP15.72■□□□□ 0.11
SHH-203ENST00000435425 TMEM178BH3BS89 294 aa15.72■□□□□ 0.11
SHH-203ENST00000435425 TTRP02766 147 aa15.72■□□□□ 0.11
SHH-203ENST00000435425 MAP2K3P46734 347 aa15.72■□□□□ 0.11
SHH-203ENST00000435425 LMO4P61968 165 aa15.72■□□□□ 0.11
SHH-203ENST00000435425 ACTC1P68032 377 aa15.72■□□□□ 0.11
SHH-203ENST00000435425 ACTA1P68133 377 aa15.72■□□□□ 0.11
SHH-203ENST00000435425 OR8B8Q15620 311 aa15.72■□□□□ 0.11
SHH-203ENST00000435425 SMN1Q16637 294 aaKnown RBP15.72■□□□□ 0.11
SHH-203ENST00000435425 ZNF684Q5T5D7 378 aa15.72■□□□□ 0.11
SHH-203ENST00000435425 FAM220AQ7Z4H9 259 aa15.72■□□□□ 0.11
SHH-203ENST00000435425 CELF2-AS1Q8N7Q2 184 aa15.72■□□□□ 0.11
SHH-203ENST00000435425 SPERTQ8NA61 448 aa15.72■□□□□ 0.11
SHH-203ENST00000435425 OR11L1Q8NGX0 322 aa15.72■□□□□ 0.11
SHH-203ENST00000435425 CNIH3Q8TBE1 160 aa15.72■□□□□ 0.11
SHH-203ENST00000435425 ZNF665Q9H7R5 613 aa15.72■□□□□ 0.11
SHH-203ENST00000435425 G6PC2Q9NQR9 355 aa15.72■□□□□ 0.11
SHH-203ENST00000435425 C14orf119Q9NWQ9 140 aa15.72■□□□□ 0.11
SHH-203ENST00000435425 PCDHGB1Q9Y5G3 927 aa15.72■□□□□ 0.11
SHH-203ENST00000435425 A6NLC8 198 aa15.71■□□□□ 0.11
SHH-203ENST00000435425 FAM157AC9JC47 383 aa15.71■□□□□ 0.11
SHH-203ENST00000435425 H3BSH0 61 aa15.71■□□□□ 0.11
SHH-203ENST00000435425 J3QRE1 110 aa15.71■□□□□ 0.11
SHH-203ENST00000435425 P2RY10O00398 339 aa15.71■□□□□ 0.11
SHH-203ENST00000435425 FAM20BO75063 409 aa15.71■□□□□ 0.11
SHH-203ENST00000435425 SULT1C4O75897 302 aa15.71■□□□□ 0.11
SHH-203ENST00000435425 IGHV2-70P01814 119 aa15.71■□□□□ 0.11
SHH-203ENST00000435425 IRF2P14316 349 aa15.71■□□□□ 0.11
SHH-203ENST00000435425 BTG1P62324 171 aa15.71■□□□□ 0.11
SHH-203ENST00000435425 ADARB1P78563 741 aaKnown RBP15.71■□□□□ 0.11
SHH-203ENST00000435425 MZT1Q08AG7 82 aa15.71■□□□□ 0.11
SHH-203ENST00000435425 PRDX4Q13162 271 aa15.71■□□□□ 0.11
SHH-203ENST00000435425 SNCBQ16143 134 aa15.71■□□□□ 0.11
SHH-203ENST00000435425 FAM201AQ5SY85 155 aa15.71■□□□□ 0.11
SHH-203ENST00000435425 FAM166AQ6J272 317 aa15.71■□□□□ 0.11
SHH-203ENST00000435425 THAP5Q7Z6K1 395 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms