RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 SHBQ15464 509 aa8.7□□□□□ -1.02
SS18-203ENST00000415083 HIST3H3Q16695 136 aa8.7□□□□□ -1.02
SS18-203ENST00000415083 HLA-DQA1Q5Y7H0 255 aa8.7□□□□□ -1.02
SS18-203ENST00000415083 GLIPR1L1Q6UWM5 242 aa8.7□□□□□ -1.02
SS18-203ENST00000415083 CLEC18BQ6UXF7 455 aa8.7□□□□□ -1.02
SS18-203ENST00000415083 PGAP1Q75T13 922 aa8.7□□□□□ -1.02
SS18-203ENST00000415083 PEG10Q86TG7 708 aaKnown RBP8.7□□□□□ -1.02
SS18-203ENST00000415083 SLC22A24Q8N4F4 322 aa8.7□□□□□ -1.02
SS18-203ENST00000415083 STT3BQ8TCJ2 826 aa8.7□□□□□ -1.02
SS18-203ENST00000415083 ARHGAP5-AS1Q96IT6 56 aa8.7□□□□□ -1.02
SS18-203ENST00000415083 UQCC2Q9BRT2 126 aa8.7□□□□□ -1.02
SS18-203ENST00000415083 LIME1Q9H400 295 aa8.7□□□□□ -1.02
SS18-203ENST00000415083 SLC39A1Q9NY26 324 aa8.7□□□□□ -1.02
SS18-203ENST00000415083 SRPK3Q9UPE1 567 aa8.7□□□□□ -1.02
SS18-203ENST00000415083 KLF2Q9Y5W3 355 aaPredicted RBP8.7□□□□□ -1.02
SS18-203ENST00000415083 KANTRA0A1W2PQU2 76 aa8.7□□□□□ -1.02
SS18-203ENST00000415083 TMEM218A2RU14 115 aa8.7□□□□□ -1.02
SS18-203ENST00000415083 C9JQL5 133 aa8.7□□□□□ -1.02
SS18-203ENST00000415083 IGLV3-1P01715 115 aa8.7□□□□□ -1.02
SS18-203ENST00000415083 GNALP38405 381 aa8.7□□□□□ -1.02
SS18-203ENST00000415083 DCDP81605 110 aaKnown RBP8.7□□□□□ -1.02
SS18-203ENST00000415083 COL19A1Q14993 1142 aa8.7□□□□□ -1.02
SS18-203ENST00000415083 CDCP2Q5VXM1 449 aa8.7□□□□□ -1.02
SS18-203ENST00000415083 SLC25A47Q6Q0C1 308 aa8.7□□□□□ -1.02
SS18-203ENST00000415083 SLC30A7Q8NEW0 376 aa8.7□□□□□ -1.02
SS18-203ENST00000415083 PHYHIPLQ96FC7 376 aa8.7□□□□□ -1.02
SS18-203ENST00000415083 TLNRD1Q9H1K6 362 aa8.7□□□□□ -1.02
SS18-203ENST00000415083 TMEM231Q9H6L2 316 aa8.7□□□□□ -1.02
SS18-203ENST00000415083 ASF1BQ9NVP2 202 aa8.7□□□□□ -1.02
SS18-203ENST00000415083 PURGQ9UJV8 347 aaKnown RBP8.7□□□□□ -1.02
SS18-203ENST00000415083 GDF9O60383 454 aa8.69□□□□□ -1.02
SS18-203ENST00000415083 LAP3P28838 519 aa8.69□□□□□ -1.02
SS18-203ENST00000415083 ZNF93P35789 620 aaPredicted RBP8.69□□□□□ -1.02
SS18-203ENST00000415083 ZNF121P58317 390 aaPredicted RBP8.69□□□□□ -1.02
SS18-203ENST00000415083 FGL1Q08830 312 aa8.69□□□□□ -1.02
SS18-203ENST00000415083 RIPPLY1Q0D2K3 151 aa8.69□□□□□ -1.02
SS18-203ENST00000415083 ST8SIA1Q92185 356 aa8.69□□□□□ -1.02
SS18-203ENST00000415083 COPS7AQ9UBW8 275 aa8.69□□□□□ -1.02
SS18-203ENST00000415083 OSGIN2Q9Y236 505 aa8.69□□□□□ -1.02
SS18-203ENST00000415083 A6NIZ1 184 aa8.69□□□□□ -1.02
SS18-203ENST00000415083 RAB3AP20336 220 aa8.69□□□□□ -1.02
SS18-203ENST00000415083 VAMP1P23763 118 aa8.69□□□□□ -1.02
SS18-203ENST00000415083 PSMB6P28072 239 aa8.69□□□□□ -1.02
SS18-203ENST00000415083 PPM1FP49593 454 aaPredicted RBP8.69□□□□□ -1.02
SS18-203ENST00000415083 RAP1BP61224 184 aa8.69□□□□□ -1.02
SS18-203ENST00000415083 RAP1AP62834 184 aa8.69□□□□□ -1.02
SS18-203ENST00000415083 SLC25A53Q5H9E4 307 aa8.69□□□□□ -1.02
SS18-203ENST00000415083 SHEQ5VZ18 495 aa8.69□□□□□ -1.02
SS18-203ENST00000415083 AWAT2Q6E213 333 aa8.69□□□□□ -1.02
SS18-203ENST00000415083 FAHD2BQ6P2I3 314 aaPredicted RBP8.69□□□□□ -1.02
SS18-203ENST00000415083 TMEM71Q6P5X7 295 aa8.69□□□□□ -1.02
SS18-203ENST00000415083 OR10G3Q8NGC4 313 aa8.69□□□□□ -1.02
SS18-203ENST00000415083 OR4K15Q8NH41 348 aa8.69□□□□□ -1.02
SS18-203ENST00000415083 NUBPLQ8TB37 319 aa8.69□□□□□ -1.02
SS18-203ENST00000415083 FAHD2AQ96GK7 314 aa8.69□□□□□ -1.02
SS18-203ENST00000415083 GPR84Q9NQS5 396 aa8.69□□□□□ -1.02
SS18-203ENST00000415083 FGF21Q9NSA1 209 aa8.69□□□□□ -1.02
SS18-203ENST00000415083 IGLV3-12A0A075B6K2 115 aa8.68□□□□□ -1.02
SS18-203ENST00000415083 A0A0B4J2A0 478 aa8.68□□□□□ -1.02
SS18-203ENST00000415083 RHPN2P1A8MT19 583 aa8.68□□□□□ -1.02
SS18-203ENST00000415083 ZNF208O43345 1280 aa8.68□□□□□ -1.02
SS18-203ENST00000415083 CCL1P22362 96 aa8.68□□□□□ -1.02
SS18-203ENST00000415083 APOBEC1P41238 236 aaKnown RBP8.68□□□□□ -1.02
SS18-203ENST00000415083 NPBWR1P48145 328 aa8.68□□□□□ -1.02
SS18-203ENST00000415083 DAP3P51398 398 aaKnown RBP8.68□□□□□ -1.02
SS18-203ENST00000415083 PRKXP51817 358 aa8.68□□□□□ -1.02
SS18-203ENST00000415083 EMP2P54851 167 aa8.68□□□□□ -1.02
SS18-203ENST00000415083 SLC9A3R2Q15599 337 aa8.68□□□□□ -1.02
SS18-203ENST00000415083 ZFP82Q8N141 532 aa8.68□□□□□ -1.02
SS18-203ENST00000415083 DTWD2Q8NBA8 298 aa8.68□□□□□ -1.02
SS18-203ENST00000415083 FOXRED1Q96CU9 486 aaPredicted RBP8.68□□□□□ -1.02
SS18-203ENST00000415083 TSNAXQ99598 290 aaKnown RBP8.68□□□□□ -1.02
SS18-203ENST00000415083 PHB2Q99623 299 aa8.68□□□□□ -1.02
SS18-203ENST00000415083 CHMP1AQ9HD42 196 aaPredicted RBP8.68□□□□□ -1.02
SS18-203ENST00000415083 SHPKQ9UHJ6 478 aa8.68□□□□□ -1.02
SS18-203ENST00000415083 ASPMQ8IZT6 3477 aa8.68□□□□□ -1.02
SS18-203ENST00000415083 C13orf42A0A1B0GVH6 325 aa8.68□□□□□ -1.02
SS18-203ENST00000415083 FAM157AC9JC47 383 aa8.68□□□□□ -1.02
SS18-203ENST00000415083 SDCBPO00560 298 aaPredicted RBP8.68□□□□□ -1.02
SS18-203ENST00000415083 HIST1H1DP16402 221 aaKnown RBP8.68□□□□□ -1.02
SS18-203ENST00000415083 GLRA1P23415 457 aa8.68□□□□□ -1.02
SS18-203ENST00000415083 CARD17Q5XLA6 110 aa8.68□□□□□ -1.02
SS18-203ENST00000415083 RAB12Q6IQ22 244 aa8.68□□□□□ -1.02
SS18-203ENST00000415083 WDSUB1Q8N9V3 476 aa8.68□□□□□ -1.02
SS18-203ENST00000415083 OR14K1Q8NGZ2 314 aa8.68□□□□□ -1.02
SS18-203ENST00000415083 TERB2Q8NHR7 220 aa8.68□□□□□ -1.02
SS18-203ENST00000415083 C2CD4CQ8TF44 421 aa8.68□□□□□ -1.02
SS18-203ENST00000415083 NUDT16L1Q9BRJ7 211 aaKnown RBP8.68□□□□□ -1.02
SS18-203ENST00000415083 NMES1Q9C002 83 aa8.68□□□□□ -1.02
SS18-203ENST00000415083 TGIF2Q9GZN2 237 aa8.68□□□□□ -1.02
SS18-203ENST00000415083 ESRP2Q9H6T0 727 aaKnown RBP8.68□□□□□ -1.02
SS18-203ENST00000415083 ASH2LQ9UBL3 628 aa8.68□□□□□ -1.02
SS18-203ENST00000415083 MLXQ9UH92 298 aa8.68□□□□□ -1.02
SS18-203ENST00000415083 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.68□□□□□ -1.02
SS18-203ENST00000415083 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.68□□□□□ -1.02
SS18-203ENST00000415083 F5H0A9 414 aaPredicted RBP8.68□□□□□ -1.02
SS18-203ENST00000415083 ID4P47928 161 aa8.68□□□□□ -1.02
SS18-203ENST00000415083 VAX1Q5SQQ9 334 aa8.68□□□□□ -1.02
SS18-203ENST00000415083 ZNF385CQ66K41 422 aaPredicted RBP8.68□□□□□ -1.02
SS18-203ENST00000415083 FAM89BQ8N5H3 189 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms