RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 GAB4Q2WGN9 574 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 FBXO27Q8NI29 283 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 STARD4Q96DR4 205 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 SRD5A3Q9H8P0 318 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 GPR45Q9Y5Y3 372 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 HEPACAM2A8MVW5 462 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 UBE2L6O14933 153 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 RRP8O43159 456 aaKnown RBP12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 HRASP01112 189 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 KRASP01116 189 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 PIPP12273 146 aaPredicted RBP12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 AOAHP28039 575 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 OR10J1P30954 320 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 MMP15P51511 669 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 TMEM267Q0VDI3 215 aaPredicted RBP12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 RIGQ13278 110 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 TAZQ16635 292 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 GPR137Q96N19 417 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 AJAP1Q9UKB5 411 aaPredicted RBP12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 MOB4Q9Y3A3 225 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 SLC5A2P31639 672 aa12.15□□□□□ -0.47
CCDC88A-204ENST00000413716 IHHQ14623 411 aa12.15□□□□□ -0.47
CCDC88A-204ENST00000413716 CTU2Q2VPK5 515 aaKnown RBP12.15□□□□□ -0.47
CCDC88A-204ENST00000413716 DEFB133Q30KQ1 61 aa12.15□□□□□ -0.47
CCDC88A-204ENST00000413716 C5orf17Q8NAS9 161 aa12.15□□□□□ -0.47
CCDC88A-204ENST00000413716 CA5BP1Q8WTZ4 195 aa12.15□□□□□ -0.47
CCDC88A-204ENST00000413716 IER2Q9BTL4 223 aa12.15□□□□□ -0.47
CCDC88A-204ENST00000413716 INTS1Q8N201 2190 aaKnown RBP12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 LY86O95711 162 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 FGF2P09038 288 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 DAPP51397 102 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 COL9A2Q14055 689 aaPredicted RBP12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 LAIR1Q6GTX8 287 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 CYS1Q717R9 158 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 CAMKMTQ7Z624 323 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 ICAM5Q9UMF0 924 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 MEGF6O75095 1541 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 PRSS38A1L453 326 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 GAGE10A6NGK3 116 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 MED25Q71SY5 747 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 BATF2Q8N1L9 274 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 OR5AU1Q8NGC0 362 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 TBX15Q96SF7 602 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 ISLRO14498 428 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 RAB29O14966 203 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 CD14P08571 375 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 TBXA2RP21731 343 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 FER1L6-AS2Q96M78 137 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 TMEM140Q9NV12 185 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 CTSLP07711 333 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 A4GALTQ9NPC4 353 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 PIPOXQ9P0Z9 390 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 OR5B21A6NL26 309 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 LRRC10Q5BKY1 277 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 CLEC14AQ86T13 490 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 HSD3B7Q9H2F3 369 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 C10orf71Q711Q0 1435 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 SMUG1Q53HV7 270 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 CST9Q5W186 159 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 SPRED1Q7Z699 444 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 PDPNQ86YL7 162 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 KAZALD1Q96I82 304 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 SCRG1O75711 98 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 CYBAP13498 195 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 CD81P60033 236 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 GAMTQ14353 236 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 DNLZQ5SXM8 178 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 H1FNTQ75WM6 255 aaPredicted RBP12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 SFTPA2Q8IWL1 248 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 SFTPA1Q8IWL2 248 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 ZCCHC14Q8WYQ9 949 aaKnown RBP12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 ZNF426Q9BUY5 554 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 CHST8Q9H2A9 424 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 CNTD2Q9H8S5 307 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 DOK5Q9P104 306 aa12.14□□□□□ -0.47
CCDC88A-204ENST00000413716 A0A1W2PN81 502 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 CLDN34H7C241 214 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 CHRNA7P36544 502 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 CTBSQ01459 385 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 PRTGQ2VWP7 1150 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 CADM3Q8N126 398 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 ZADH2Q8N4Q0 377 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 WBP2Q969T9 261 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 MCHR2Q969V1 340 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 DCBLD2Q96PD2 775 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 TNFRSF13CQ96RJ3 184 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 NTNG1Q9Y2I2 539 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 YOD1Q5VVQ6 348 aaPredicted RBP12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 OR52E1Q8NGJ3 308 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 LKAAEAR1Q8TD35 194 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 TRMT61AQ96FX7 289 aaKnown RBP12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 C12orf42Q96LP6 360 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 OR51B4Q9Y5P0 310 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 LOC107986453A0A1B0GWG9 222 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 C5orf49A4QMS7 147 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 CRYABP02511 175 aaKnown RBP12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 SNRPNP63162 240 aaKnown RBP12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 FAM169BQ8N8A8 192 aa12.13□□□□□ -0.47
CCDC88A-204ENST00000413716 IGSF8Q969P0 613 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms