RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 PPIAL4DF5H284 164 aa12.42□□□□□ -0.42
LIMS4-201ENST00000413601 PHF1O43189 567 aaPredicted RBP12.42□□□□□ -0.42
LIMS4-201ENST00000413601 GRPP07492 148 aa12.42□□□□□ -0.42
LIMS4-201ENST00000413601 PPIAL4FP0DN26 164 aa12.42□□□□□ -0.42
LIMS4-201ENST00000413601 CFL1P23528 166 aaKnown RBP12.42□□□□□ -0.42
LIMS4-201ENST00000413601 PSMA6P60900 246 aaKnown RBP12.42□□□□□ -0.42
LIMS4-201ENST00000413601 HOXA4Q00056 320 aaPredicted RBP12.42□□□□□ -0.42
LIMS4-201ENST00000413601 ZFP1Q6P2D0 407 aa12.42□□□□□ -0.42
LIMS4-201ENST00000413601 C1orf229Q6ZS94 237 aaPredicted RBP12.42□□□□□ -0.42
LIMS4-201ENST00000413601 KLBQ86Z14 1044 aa12.42□□□□□ -0.42
LIMS4-201ENST00000413601 RFLNBQ8N5W9 214 aa12.42□□□□□ -0.42
LIMS4-201ENST00000413601 SPERTQ8NA61 448 aa12.42□□□□□ -0.42
LIMS4-201ENST00000413601 C19orf18Q8NEA5 215 aa12.42□□□□□ -0.42
LIMS4-201ENST00000413601 OR4M2Q8NGB6 313 aa12.42□□□□□ -0.42
LIMS4-201ENST00000413601 OR8B12Q8NGG6 310 aa12.42□□□□□ -0.42
LIMS4-201ENST00000413601 LYZL4Q96KX0 146 aa12.42□□□□□ -0.42
LIMS4-201ENST00000413601 TMEM246Q9BRR3 403 aa12.42□□□□□ -0.42
LIMS4-201ENST00000413601 TMPRSS13Q9BYE2 586 aa12.42□□□□□ -0.42
LIMS4-201ENST00000413601 MROQ9BYG7 248 aa12.42□□□□□ -0.42
LIMS4-201ENST00000413601 RGCCQ9H4X1 137 aa12.42□□□□□ -0.42
LIMS4-201ENST00000413601 NIPAL2Q9H841 368 aa12.42□□□□□ -0.42
LIMS4-201ENST00000413601 FN3KRPQ9HA64 309 aa12.42□□□□□ -0.42
LIMS4-201ENST00000413601 PPIAL4AQ9Y536 164 aa12.42□□□□□ -0.42
LIMS4-201ENST00000413601 TMEM14AQ9Y6G1 99 aa12.42□□□□□ -0.42
LIMS4-201ENST00000413601 LOC105371242A0A075B767 164 aa12.41□□□□□ -0.42
LIMS4-201ENST00000413601 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.41□□□□□ -0.42
LIMS4-201ENST00000413601 FOXH1O75593 365 aa12.41□□□□□ -0.42
LIMS4-201ENST00000413601 PTBP3O95758 552 aaKnown RBP12.41□□□□□ -0.42
LIMS4-201ENST00000413601 WNT2P09544 360 aa12.41□□□□□ -0.42
LIMS4-201ENST00000413601 THBS2P35442 1172 aa12.41□□□□□ -0.42
LIMS4-201ENST00000413601 SRSF2Q01130 221 aaKnown RBP12.41□□□□□ -0.42
LIMS4-201ENST00000413601 OR8B8Q15620 311 aa12.41□□□□□ -0.42
LIMS4-201ENST00000413601 ZNF404Q494X3 552 aa12.41□□□□□ -0.42
LIMS4-201ENST00000413601 DEGS2Q6QHC5 323 aa12.41□□□□□ -0.42
LIMS4-201ENST00000413601 ZNF826PQ6ZT77 177 aa12.41□□□□□ -0.42
LIMS4-201ENST00000413601 GID4Q8IVV7 300 aa12.41□□□□□ -0.42
LIMS4-201ENST00000413601 SLC35F2Q8IXU6 374 aa12.41□□□□□ -0.42
LIMS4-201ENST00000413601 BOLLQ8N9W6 283 aaKnown RBP12.41□□□□□ -0.42
LIMS4-201ENST00000413601 DEFB108BQ8NET1 73 aa12.41□□□□□ -0.42
LIMS4-201ENST00000413601 OR8S1Q8NH09 359 aa12.41□□□□□ -0.42
LIMS4-201ENST00000413601 ASB17Q8WXJ9 295 aa12.41□□□□□ -0.42
LIMS4-201ENST00000413601 OR8B4Q96RC9 309 aa12.41□□□□□ -0.42
LIMS4-201ENST00000413601 METTL17Q9H7H0 456 aaPredicted RBP12.41□□□□□ -0.42
LIMS4-201ENST00000413601 ADGRL4Q9HBW9 690 aa12.41□□□□□ -0.42
LIMS4-201ENST00000413601 C14orf119Q9NWQ9 140 aa12.41□□□□□ -0.42
LIMS4-201ENST00000413601 RNF7Q9UBF6 113 aa12.41□□□□□ -0.42
LIMS4-201ENST00000413601 IKZF2Q9UKS7 526 aa12.41□□□□□ -0.42
LIMS4-201ENST00000413601 RHBDD3Q9Y3P4 386 aa12.41□□□□□ -0.42
LIMS4-201ENST00000413601 TMEM269A0A1B0GVZ9 245 aa12.4□□□□□ -0.42
LIMS4-201ENST00000413601 A6NLC8 198 aa12.4□□□□□ -0.42
LIMS4-201ENST00000413601 TRAPPC2LH3BP13 241 aa12.4□□□□□ -0.42
LIMS4-201ENST00000413601 J3QLI3 93 aa12.4□□□□□ -0.42
LIMS4-201ENST00000413601 EI24O14681 340 aa12.4□□□□□ -0.42
LIMS4-201ENST00000413601 MAGEB4O15481 346 aaPredicted RBP12.4□□□□□ -0.42
LIMS4-201ENST00000413601 ALPLP05186 524 aa12.4□□□□□ -0.42
LIMS4-201ENST00000413601 RPS2P15880 293 aaKnown RBP12.4□□□□□ -0.42
LIMS4-201ENST00000413601 ACKR3P25106 362 aa12.4□□□□□ -0.42
LIMS4-201ENST00000413601 CXCR4P61073 352 aa12.4□□□□□ -0.42
LIMS4-201ENST00000413601 ROM1Q03395 351 aa12.4□□□□□ -0.42
LIMS4-201ENST00000413601 MZT1Q08AG7 82 aa12.4□□□□□ -0.42
LIMS4-201ENST00000413601 ESCO2Q56NI9 601 aa12.4□□□□□ -0.42
LIMS4-201ENST00000413601 WDR86Q86TI4 376 aa12.4□□□□□ -0.42
LIMS4-201ENST00000413601 ZNF679Q8IYX0 411 aa12.4□□□□□ -0.42
LIMS4-201ENST00000413601 PLPP7Q8NBV4 271 aa12.4□□□□□ -0.42
LIMS4-201ENST00000413601 CSNK2A3Q8NEV1 391 aa12.4□□□□□ -0.42
LIMS4-201ENST00000413601 OR51G2Q8NGK0 314 aa12.4□□□□□ -0.42
LIMS4-201ENST00000413601 APOL4Q9BPW4 351 aa12.4□□□□□ -0.42
LIMS4-201ENST00000413601 PAPOLGQ9BWT3 736 aaKnown RBP12.4□□□□□ -0.42
LIMS4-201ENST00000413601 C7orf69Q9H7B7 122 aa12.4□□□□□ -0.42
LIMS4-201ENST00000413601 MMP26Q9NRE1 261 aa12.4□□□□□ -0.42
LIMS4-201ENST00000413601 C1orf123Q9NWV4 160 aa12.4□□□□□ -0.42
LIMS4-201ENST00000413601 FAM206AQ9NX38 181 aa12.4□□□□□ -0.42
LIMS4-201ENST00000413601 HAO2Q9NYQ3 351 aa12.4□□□□□ -0.42
LIMS4-201ENST00000413601 MIOXQ9UGB7 285 aa12.4□□□□□ -0.42
LIMS4-201ENST00000413601 ORC6Q9Y5N6 252 aa12.4□□□□□ -0.42
LIMS4-201ENST00000413601 FBN1P35555 2871 aaKnown RBP12.4□□□□□ -0.42
LIMS4-201ENST00000413601 MXRA5Q9NR99 2828 aa12.4□□□□□ -0.42
LIMS4-201ENST00000413601 RNF212BA8MTL3 300 aa12.39□□□□□ -0.43
LIMS4-201ENST00000413601 A8MXK9 166 aa12.39□□□□□ -0.43
LIMS4-201ENST00000413601 ZNF254O75437 659 aa12.39□□□□□ -0.43
LIMS4-201ENST00000413601 FSTL3O95633 263 aa12.39□□□□□ -0.43
LIMS4-201ENST00000413601 ADRA2CP18825 462 aa12.39□□□□□ -0.43
LIMS4-201ENST00000413601 GATA3P23771 443 aa12.39□□□□□ -0.43
LIMS4-201ENST00000413601 GNALP38405 381 aa12.39□□□□□ -0.43
LIMS4-201ENST00000413601 RIDAP52758 137 aaKnown RBP12.39□□□□□ -0.43
LIMS4-201ENST00000413601 ZIK1Q3SY52 487 aaPredicted RBP12.39□□□□□ -0.43
LIMS4-201ENST00000413601 SFRP4Q6FHJ7 346 aaPredicted RBP12.39□□□□□ -0.43
LIMS4-201ENST00000413601 ZNF322Q6U7Q0 402 aaPredicted RBP12.39□□□□□ -0.43
LIMS4-201ENST00000413601 LYPD2Q6UXB3 125 aa12.39□□□□□ -0.43
LIMS4-201ENST00000413601 C10orf67Q8IYJ2 551 aa12.39□□□□□ -0.43
LIMS4-201ENST00000413601 OR8J1Q8NGP2 316 aa12.39□□□□□ -0.43
LIMS4-201ENST00000413601 UBE2FQ969M7 185 aa12.39□□□□□ -0.43
LIMS4-201ENST00000413601 PPP1R14AQ96A00 147 aa12.39□□□□□ -0.43
LIMS4-201ENST00000413601 NEIL1Q96FI4 390 aaPredicted RBP12.39□□□□□ -0.43
LIMS4-201ENST00000413601 RAB3IPQ96QF0 476 aaPredicted RBP12.39□□□□□ -0.43
LIMS4-201ENST00000413601 SSBP3Q9BWW4 388 aaPredicted RBP12.39□□□□□ -0.43
LIMS4-201ENST00000413601 PBOV1Q9GZY1 135 aa12.39□□□□□ -0.43
LIMS4-201ENST00000413601 CLN6Q9NWW5 311 aa12.39□□□□□ -0.43
LIMS4-201ENST00000413601 USE1Q9NZ43 259 aa12.39□□□□□ -0.43
LIMS4-201ENST00000413601 WARS2Q9UGM6 360 aaKnown RBP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms