RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 OR8B12Q8NGG6 310 aa8.04□□□□□ -1.12
LIG4-202ENST00000405925 OR52I2Q8NH67 350 aa8.04□□□□□ -1.12
LIG4-202ENST00000405925 ZCCHC14Q8WYQ9 949 aaKnown RBP8.04□□□□□ -1.12
LIG4-202ENST00000405925 H1FXQ92522 213 aaKnown RBP8.04□□□□□ -1.12
LIG4-202ENST00000405925 GCDHQ92947 438 aaPredicted RBP8.04□□□□□ -1.12
LIG4-202ENST00000405925 GPX7Q96SL4 187 aaPredicted RBP8.04□□□□□ -1.12
LIG4-202ENST00000405925 FANCMQ8IYD8 2048 aa8.04□□□□□ -1.12
LIG4-202ENST00000405925 NCOR2Q9Y618 2525 aa8.04□□□□□ -1.12
LIG4-202ENST00000405925 TRAV1-2A0A0B4J238 106 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 FAM221AA4D161 298 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 SPRY1O43609 319 aaPredicted RBP8.03□□□□□ -1.12
LIG4-202ENST00000405925 NME2P1O60361 137 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 ZNF354AO60765 605 aaPredicted RBP8.03□□□□□ -1.12
LIG4-202ENST00000405925 SLC22A5O76082 557 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 NME2P22392 152 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 ZNF81P51508 661 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 IL13RA1P78552 427 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 METTL11BQ5VVY1 283 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 DMKNQ6E0U4 476 aaPredicted RBP8.03□□□□□ -1.12
LIG4-202ENST00000405925 ABHD5Q8WTS1 349 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 NUDCD2Q8WVJ2 157 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 RTN4RQ9BZR6 473 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 RBFOX1Q9NWB1 397 aaKnown RBP8.03□□□□□ -1.12
LIG4-202ENST00000405925 MS4A18H0YCH9 400 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 SPRY3O43610 288 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 TRAF3IP2O43734 574 aaPredicted RBP8.03□□□□□ -1.12
LIG4-202ENST00000405925 FAM87AP0C7U9 286 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 PSMB1P20618 241 aaKnown RBP8.03□□□□□ -1.12
LIG4-202ENST00000405925 GLRA1P23415 457 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 DUSP1P28562 367 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 OPRM1P35372 400 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 ZNF133P52736 654 aaPredicted RBP8.03□□□□□ -1.12
LIG4-202ENST00000405925 DGCR2P98153 550 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 MS4A18Q3C1V0 323 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 HACD4Q5VWC8 232 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 PLXDC2Q6UX71 529 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 TMEM108Q6UXF1 575 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 TMEM185AQ8NFB2 350 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 OR2T35Q8NGX2 323 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 OR10AC1Q8NH08 325 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 SECTM1Q8WVN6 248 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 OR2M2Q96R28 347 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 BARHL1Q9BZE3 327 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 C11orf54Q9H0W9 315 aaPredicted RBP8.03□□□□□ -1.12
LIG4-202ENST00000405925 SPACA1Q9HBV2 294 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 ENY2Q9NPA8 101 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 ABCA4P78363 2273 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 SNRNP200O75643 2136 aaKnown RBP8.03□□□□□ -1.12
LIG4-202ENST00000405925 KIAA1671Q9BY89 1806 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 KIF26AQ9ULI4 1882 aaPredicted RBP8.03□□□□□ -1.12
LIG4-202ENST00000405925 LY6G6EA0A0G2JKS1 128 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 EIF4EP06730 217 aaKnown RBP8.03□□□□□ -1.12
LIG4-202ENST00000405925 MGMTP16455 207 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 CA6P23280 308 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 GPM6AP51674 278 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 NDUFA5Q16718 116 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 TATDN3Q17R31 274 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 GSG1LQ6UXU4 331 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 SLC16A12Q6ZSM3 486 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 FAM214BQ7L5A3 538 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 CXorf67Q86X51 503 aaPredicted RBP8.03□□□□□ -1.12
LIG4-202ENST00000405925 ZBTB8BQ8NAP8 495 aaPredicted RBP8.03□□□□□ -1.12
LIG4-202ENST00000405925 SNX18Q96RF0 628 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 PHB2Q99623 299 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 TMEM100Q9NV29 134 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 TBCCD1Q9NVR7 557 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 FRRS1LQ9P0K9 344 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 UGT2A1Q9Y4X1 527 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 U3KQA8 63 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 MEIOCA2RUB1 952 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 OR4C45A6NMZ5 311 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 SIRPB1O00241 398 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 RAMP1O60894 148 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 ACTL6BO94805 426 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 TXNDC12O95881 172 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 NDUFB7P17568 137 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 SRP9P49458 86 aaKnown RBP8.03□□□□□ -1.12
LIG4-202ENST00000405925 EVX1P49640 407 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 TNFSF10P50591 281 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 CCDC92Q53HC0 331 aaPredicted RBP8.03□□□□□ -1.12
LIG4-202ENST00000405925 C19orf48Q6RUI8 117 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 GDPD3Q7L5L3 318 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 CCDC36Q8IYA8 594 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 RNF133Q8WVZ7 376 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 SPSB1Q96BD6 273 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 OR51J1Q9H342 316 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 OPA3Q9H6K4 179 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 ZNF703Q9H7S9 590 aaPredicted RBP8.03□□□□□ -1.12
LIG4-202ENST00000405925 ST3GAL6Q9Y274 331 aa8.03□□□□□ -1.12
LIG4-202ENST00000405925 DOCK7Q96N67 2140 aa8.02□□□□□ -1.12
LIG4-202ENST00000405925 OR14I1A6ND48 311 aa8.02□□□□□ -1.13
LIG4-202ENST00000405925 CCL21O00585 134 aa8.02□□□□□ -1.13
LIG4-202ENST00000405925 GLSO94925 669 aaPredicted RBP8.02□□□□□ -1.13
LIG4-202ENST00000405925 CST2P09228 141 aa8.02□□□□□ -1.13
LIG4-202ENST00000405925 GABRB1P18505 474 aa8.02□□□□□ -1.13
LIG4-202ENST00000405925 MFGE8Q08431 387 aaPredicted RBP8.02□□□□□ -1.13
LIG4-202ENST00000405925 TSC22D1Q15714 1073 aa8.02□□□□□ -1.13
LIG4-202ENST00000405925 ARSJQ5FYB0 599 aaPredicted RBP8.02□□□□□ -1.13
LIG4-202ENST00000405925 LINC00299Q6ZSB3 139 aa8.02□□□□□ -1.13
LIG4-202ENST00000405925 RFLNBQ8N5W9 214 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms