RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 GPX5O75715 221 aa15.52■□□□□ 0.07
SDC1-203ENST00000403076 COX6B1P14854 86 aa15.52■□□□□ 0.07
SDC1-203ENST00000403076 GNALP38405 381 aa15.52■□□□□ 0.07
SDC1-203ENST00000403076 CRYBB2P43320 205 aa15.52■□□□□ 0.07
SDC1-203ENST00000403076 RIPPLY1Q0D2K3 151 aa15.52■□□□□ 0.07
SDC1-203ENST00000403076 ZMAT1Q5H9K5 638 aa15.52■□□□□ 0.07
SDC1-203ENST00000403076 TMEM91Q6ZNR0 172 aa15.52■□□□□ 0.07
SDC1-203ENST00000403076 ACBD4Q8NC06 268 aa15.52■□□□□ 0.07
SDC1-203ENST00000403076 OR56B2PQ8NGI1 322 aa15.52■□□□□ 0.07
SDC1-203ENST00000403076 TMEM171Q8WVE6 324 aa15.52■□□□□ 0.07
SDC1-203ENST00000403076 NEUROG1Q92886 237 aa15.52■□□□□ 0.07
SDC1-203ENST00000403076 HAVCR1Q96D42 359 aa15.52■□□□□ 0.07
SDC1-203ENST00000403076 GSTK1Q9Y2Q3 226 aa15.52■□□□□ 0.07
SDC1-203ENST00000403076 V9GYS6 101 aa15.52■□□□□ 0.07
SDC1-203ENST00000403076 A6NNC1 897 aa15.51■□□□□ 0.07
SDC1-203ENST00000403076 CD300LBA8K4G0 201 aa15.51■□□□□ 0.07
SDC1-203ENST00000403076 GATBO75879 557 aaKnown RBP15.51■□□□□ 0.07
SDC1-203ENST00000403076 FAHP16930 419 aa15.51■□□□□ 0.07
SDC1-203ENST00000403076 LOXP28300 417 aaPredicted RBP15.51■□□□□ 0.07
SDC1-203ENST00000403076 DDOSTP39656 456 aa15.51■□□□□ 0.07
SDC1-203ENST00000403076 LSM3P62310 102 aaKnown RBP15.51■□□□□ 0.07
SDC1-203ENST00000403076 PSG7Q13046 419 aa15.51■□□□□ 0.07
SDC1-203ENST00000403076 OR8B8Q15620 311 aa15.51■□□□□ 0.07
SDC1-203ENST00000403076 MBNL2Q5VZF2 373 aaKnown RBP15.51■□□□□ 0.07
SDC1-203ENST00000403076 ANKRD13BQ86YJ7 626 aa15.51■□□□□ 0.07
SDC1-203ENST00000403076 OR5AS1Q8N127 324 aa15.51■□□□□ 0.07
SDC1-203ENST00000403076 BHLHE23Q8NDY6 225 aa15.51■□□□□ 0.07
SDC1-203ENST00000403076 RPL3LQ92901 407 aaKnown RBP15.51■□□□□ 0.07
SDC1-203ENST00000403076 NAA50Q9GZZ1 169 aaKnown RBP15.51■□□□□ 0.07
SDC1-203ENST00000403076 ZNF442Q9H7R0 627 aa15.51■□□□□ 0.07
SDC1-203ENST00000403076 CISD1Q9NZ45 108 aaKnown RBP15.51■□□□□ 0.07
SDC1-203ENST00000403076 DPPA5A6NC42 116 aa15.5■□□□□ 0.07
SDC1-203ENST00000403076 E7EQL1 145 aa15.5■□□□□ 0.07
SDC1-203ENST00000403076 TIMM8AO60220 97 aaPredicted RBP15.5■□□□□ 0.07
SDC1-203ENST00000403076 ACKR3P25106 362 aa15.5■□□□□ 0.07
SDC1-203ENST00000403076 KLF3P57682 345 aaPredicted RBP15.5■□□□□ 0.07
SDC1-203ENST00000403076 C22orf42Q6IC83 251 aa15.5■□□□□ 0.07
SDC1-203ENST00000403076 CD200R1LQ6Q8B3 271 aa15.5■□□□□ 0.07
SDC1-203ENST00000403076 UNQ9370/PRO34162Q6UXP9 181 aa15.5■□□□□ 0.07
SDC1-203ENST00000403076 GDPGP1Q6ZNW5 385 aa15.5■□□□□ 0.07
SDC1-203ENST00000403076 CSNK2A3Q8NEV1 391 aa15.5■□□□□ 0.07
SDC1-203ENST00000403076 ITFG2Q969R8 447 aa15.5■□□□□ 0.07
SDC1-203ENST00000403076 DERL3Q96Q80 235 aa15.5■□□□□ 0.07
SDC1-203ENST00000403076 SYT3Q9BQG1 590 aa15.5■□□□□ 0.07
SDC1-203ENST00000403076 TMEM204Q9BSN7 226 aa15.5■□□□□ 0.07
SDC1-203ENST00000403076 NOX4Q9NPH5 578 aa15.5■□□□□ 0.07
SDC1-203ENST00000403076 BATF3Q9NR55 127 aa15.5■□□□□ 0.07
SDC1-203ENST00000403076 TXNL4BQ9NX01 149 aaKnown RBP15.5■□□□□ 0.07
SDC1-203ENST00000403076 ENPP5Q9UJA9 477 aa15.5■□□□□ 0.07
SDC1-203ENST00000403076 PURGQ9UJV8 347 aaKnown RBP15.5■□□□□ 0.07
SDC1-203ENST00000403076 DHRS7CA6NNS2 312 aa15.49■□□□□ 0.07
SDC1-203ENST00000403076 SC5DO75845 299 aa15.49■□□□□ 0.07
SDC1-203ENST00000403076 ARL6IP5O75915 188 aa15.49■□□□□ 0.07
SDC1-203ENST00000403076 OR4A8P0C604 315 aa15.49■□□□□ 0.07
SDC1-203ENST00000403076 ZNF250P15622 560 aa15.49■□□□□ 0.07
SDC1-203ENST00000403076 GALP22466 123 aa15.49■□□□□ 0.07
SDC1-203ENST00000403076 TNK1Q13470 666 aa15.49■□□□□ 0.07
SDC1-203ENST00000403076 MSMPQ1L6U9 139 aa15.49■□□□□ 0.07
SDC1-203ENST00000403076 ZNF672Q499Z4 452 aaPredicted RBP15.49■□□□□ 0.07
SDC1-203ENST00000403076 HSD17B12Q53GQ0 312 aa15.49■□□□□ 0.07
SDC1-203ENST00000403076 FAM27D1Q5T7N8 215 aa15.49■□□□□ 0.07
SDC1-203ENST00000403076 LRP11Q86VZ4 500 aa15.49■□□□□ 0.07
SDC1-203ENST00000403076 FTMTQ8N4E7 242 aa15.49■□□□□ 0.07
SDC1-203ENST00000403076 PIGCQ92535 297 aa15.49■□□□□ 0.07
SDC1-203ENST00000403076 PHYHIPQ92561 330 aa15.49■□□□□ 0.07
SDC1-203ENST00000403076 MRPL24Q96A35 216 aaKnown RBP15.49■□□□□ 0.07
SDC1-203ENST00000403076 ORAI1Q96D31 301 aa15.49■□□□□ 0.07
SDC1-203ENST00000403076 ADAT3Q96EY9 351 aaPredicted RBP15.49■□□□□ 0.07
SDC1-203ENST00000403076 TRMT61AQ96FX7 289 aaKnown RBP15.49■□□□□ 0.07
SDC1-203ENST00000403076 CKLFQ9UBR5 152 aa15.49■□□□□ 0.07
SDC1-203ENST00000403076 ZNF816-ZNF321PA0A0X1KG74 233 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 A0A1W2PPW3 197 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 ANKRD30BLA7E2S9 258 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 GOSR1O95249 250 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 RAF1P04049 648 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 FGF9P31371 208 aaPredicted RBP15.48■□□□□ 0.07
SDC1-203ENST00000403076 ALKBH6Q3KRA9 238 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 Q6ZSR3 168 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 SERPINA12Q8IW75 414 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 OR5D14Q8NGL3 314 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 C10orf35Q96D05 121 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 CENPOQ9BU64 300 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 MRPL37Q9BZE1 423 aaKnown RBP15.48■□□□□ 0.07
SDC1-203ENST00000403076 PLK3Q9H4B4 646 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 NDUFA13Q9P0J0 144 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 RHBDD3Q9Y3P4 386 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 ROS1P08922 2347 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 TRBV5-7A0A0A0MS05 114 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 SMIM31A0A1B0GVY4 71 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 ANKRD61A6NGH8 418 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 IQCF6A8MYZ5 107 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 IGHV3-13P01766 116 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 UCHL1P09936 223 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 OCMP0CE72 109 aaPredicted RBP15.48■□□□□ 0.07
SDC1-203ENST00000403076 KITLGP21583 273 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 CALRP27797 417 aaKnown RBP15.48■□□□□ 0.07
SDC1-203ENST00000403076 APOBEC3AP31941 199 aaPredicted RBP15.48■□□□□ 0.07
SDC1-203ENST00000403076 TMBIM6P55061 237 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 ADIPOQQ15848 244 aa15.48■□□□□ 0.07
SDC1-203ENST00000403076 MOGQ16653 247 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms