RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 DBTP11182 482 aaKnown RBP18.34■□□□□ 0.53
CLN3-207ENST00000395653 ADARB1P78563 741 aaKnown RBP18.34■□□□□ 0.53
CLN3-207ENST00000395653 ZNF85Q03923 595 aa18.34■□□□□ 0.53
CLN3-207ENST00000395653 MFGE8Q08431 387 aaPredicted RBP18.34■□□□□ 0.53
CLN3-207ENST00000395653 MAB21L1Q13394 359 aa18.34■□□□□ 0.53
CLN3-207ENST00000395653 ZNF691Q5VV52 312 aa18.34■□□□□ 0.53
CLN3-207ENST00000395653 DHRSXQ8N5I4 330 aa18.34■□□□□ 0.53
CLN3-207ENST00000395653 YIPF7Q8N8F6 280 aa18.34■□□□□ 0.53
CLN3-207ENST00000395653 CYGBQ8WWM9 190 aa18.34■□□□□ 0.53
CLN3-207ENST00000395653 LYZL4Q96KX0 146 aa18.34■□□□□ 0.53
CLN3-207ENST00000395653 SIGLEC11Q96RL6 698 aa18.34■□□□□ 0.53
CLN3-207ENST00000395653 VCXQ9H320 206 aa18.34■□□□□ 0.53
CLN3-207ENST00000395653 METTL15A6NJ78 407 aa18.33■□□□□ 0.53
CLN3-207ENST00000395653 IL5RAQ01344 420 aa18.33■□□□□ 0.53
CLN3-207ENST00000395653 MVKQ03426 396 aa18.33■□□□□ 0.53
CLN3-207ENST00000395653 CYB5R2Q6BCY4 276 aa18.33■□□□□ 0.53
CLN3-207ENST00000395653 PLEKHG7Q6ZR37 379 aa18.33■□□□□ 0.53
CLN3-207ENST00000395653 PEG10Q86TG7 708 aaKnown RBP18.33■□□□□ 0.53
CLN3-207ENST00000395653 ERGIC1Q969X5 290 aa18.33■□□□□ 0.53
CLN3-207ENST00000395653 LGALS12Q96DT0 336 aa18.33■□□□□ 0.53
CLN3-207ENST00000395653 RNPEPL1Q9HAU8 725 aa18.33■□□□□ 0.53
CLN3-207ENST00000395653 G6PC2Q9NQR9 355 aa18.33■□□□□ 0.53
CLN3-207ENST00000395653 SNX5Q9Y5X3 404 aa18.33■□□□□ 0.53
CLN3-207ENST00000395653 ABCA1O95477 2261 aa18.33■□□□□ 0.52
CLN3-207ENST00000395653 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP18.32■□□□□ 0.52
CLN3-207ENST00000395653 WNT9BO14905 357 aa18.32■□□□□ 0.52
CLN3-207ENST00000395653 PTBP3O95758 552 aaKnown RBP18.32■□□□□ 0.52
CLN3-207ENST00000395653 IGLV3-1P01715 115 aa18.32■□□□□ 0.52
CLN3-207ENST00000395653 IL2RGP31785 369 aa18.32■□□□□ 0.52
CLN3-207ENST00000395653 IL18R1Q13478 541 aa18.32■□□□□ 0.52
CLN3-207ENST00000395653 ZNF181Q2M3W8 571 aa18.32■□□□□ 0.52
CLN3-207ENST00000395653 AVPI1Q5T686 147 aa18.32■□□□□ 0.52
CLN3-207ENST00000395653 LIPNQ5VXI9 398 aa18.32■□□□□ 0.52
CLN3-207ENST00000395653 SETD9Q8NE22 299 aa18.32■□□□□ 0.52
CLN3-207ENST00000395653 CLDND2Q8NHS1 167 aa18.32■□□□□ 0.52
CLN3-207ENST00000395653 ADI1Q9BV57 179 aa18.32■□□□□ 0.52
CLN3-207ENST00000395653 NARFLQ9H6Q4 476 aa18.32■□□□□ 0.52
CLN3-207ENST00000395653 DCAF16Q9NXF7 216 aa18.32■□□□□ 0.52
CLN3-207ENST00000395653 NPTNQ9Y639 398 aa18.32■□□□□ 0.52
CLN3-207ENST00000395653 SETD2Q9BYW2 2564 aaPredicted RBP18.32■□□□□ 0.52
CLN3-207ENST00000395653 HIVEP2P31629 2446 aa18.32■□□□□ 0.52
CLN3-207ENST00000395653 YLPM1P49750 1951 aaKnown RBP18.32■□□□□ 0.52
CLN3-207ENST00000395653 WBP4O75554 376 aaKnown RBP18.32■□□□□ 0.52
CLN3-207ENST00000395653 CLIC3O95833 236 aa18.32■□□□□ 0.52
CLN3-207ENST00000395653 TTRP02766 147 aa18.32■□□□□ 0.52
CLN3-207ENST00000395653 ATP6V1B1P15313 513 aa18.32■□□□□ 0.52
CLN3-207ENST00000395653 ACKR3P25106 362 aa18.32■□□□□ 0.52
CLN3-207ENST00000395653 ISL1P61371 349 aa18.32■□□□□ 0.52
CLN3-207ENST00000395653 MZT1Q08AG7 82 aa18.32■□□□□ 0.52
CLN3-207ENST00000395653 RAB40BQ12829 278 aa18.32■□□□□ 0.52
CLN3-207ENST00000395653 C6orf52Q5T4I8 152 aa18.32■□□□□ 0.52
CLN3-207ENST00000395653 BCL2L15Q5TBC7 163 aa18.32■□□□□ 0.52
CLN3-207ENST00000395653 FAM220AQ7Z4H9 259 aa18.32■□□□□ 0.52
CLN3-207ENST00000395653 MOGAT3Q86VF5 341 aa18.32■□□□□ 0.52
CLN3-207ENST00000395653 ELMOD2Q8IZ81 293 aa18.32■□□□□ 0.52
CLN3-207ENST00000395653 ACBD7Q8N6N7 88 aa18.32■□□□□ 0.52
CLN3-207ENST00000395653 PLPP7Q8NBV4 271 aa18.32■□□□□ 0.52
CLN3-207ENST00000395653 DVL3Q92997 716 aaPredicted RBP18.32■□□□□ 0.52
CLN3-207ENST00000395653 C1orf159Q96HA4 380 aa18.32■□□□□ 0.52
CLN3-207ENST00000395653 AMBNQ9NP70 447 aa18.32■□□□□ 0.52
CLN3-207ENST00000395653 MRPS18AQ9NVS2 196 aaKnown RBP18.32■□□□□ 0.52
CLN3-207ENST00000395653 OR52A1Q9UKL2 312 aa18.32■□□□□ 0.52
CLN3-207ENST00000395653 GTF2A1LQ9UNN4 478 aa18.32■□□□□ 0.52
CLN3-207ENST00000395653 RHBDD3Q9Y3P4 386 aa18.32■□□□□ 0.52
CLN3-207ENST00000395653 RPL36Q9Y3U8 105 aaKnown RBP18.32■□□□□ 0.52
CLN3-207ENST00000395653 DYSFO75923 2080 aa18.31■□□□□ 0.52
CLN3-207ENST00000395653 DAPL1A0PJW8 107 aa18.31■□□□□ 0.52
CLN3-207ENST00000395653 LRRC30A6NM36 301 aa18.31■□□□□ 0.52
CLN3-207ENST00000395653 H0YAE9 185 aa18.31■□□□□ 0.52
CLN3-207ENST00000395653 H0YHG0 523 aa18.31■□□□□ 0.52
CLN3-207ENST00000395653 TMEM178BH3BS89 294 aa18.31■□□□□ 0.52
CLN3-207ENST00000395653 MAP2K3P46734 347 aa18.31■□□□□ 0.52
CLN3-207ENST00000395653 CDONQ4KMG0 1287 aa18.31■□□□□ 0.52
CLN3-207ENST00000395653 KCTD20Q7Z5Y7 419 aa18.31■□□□□ 0.52
CLN3-207ENST00000395653 ZNF420Q8TAQ5 688 aaPredicted RBP18.31■□□□□ 0.52
CLN3-207ENST00000395653 OR51E1Q8TCB6 317 aa18.31■□□□□ 0.52
CLN3-207ENST00000395653 Q8TCH9 128 aa18.31■□□□□ 0.52
CLN3-207ENST00000395653 PPP1R14AQ96A00 147 aa18.31■□□□□ 0.52
CLN3-207ENST00000395653 MSI2Q96DH6 328 aaKnown RBP18.31■□□□□ 0.52
CLN3-207ENST00000395653 SOX7Q9BT81 388 aa18.31■□□□□ 0.52
CLN3-207ENST00000395653 PAPOLGQ9BWT3 736 aaKnown RBP18.31■□□□□ 0.52
CLN3-207ENST00000395653 GPR84Q9NQS5 396 aa18.31■□□□□ 0.52
CLN3-207ENST00000395653 C14orf119Q9NWQ9 140 aa18.31■□□□□ 0.52
CLN3-207ENST00000395653 MPC1Q9Y5U8 109 aa18.31■□□□□ 0.52
CLN3-207ENST00000395653 HSPE1-MOB4S4R3N1 261 aa18.31■□□□□ 0.52
CLN3-207ENST00000395653 NF1P21359 2839 aa18.31■□□□□ 0.52
CLN3-207ENST00000395653 IGHV3-64DA0A0J9YX35 117 aa18.3■□□□□ 0.52
CLN3-207ENST00000395653 RPP14O95059 124 aaKnown RBP18.3■□□□□ 0.52
CLN3-207ENST00000395653 FADS2O95864 444 aaKnown RBP18.3■□□□□ 0.52
CLN3-207ENST00000395653 CST4P01036 141 aa18.3■□□□□ 0.52
CLN3-207ENST00000395653 ZNF16P17020 682 aaPredicted RBP18.3■□□□□ 0.52
CLN3-207ENST00000395653 GNALP38405 381 aa18.3■□□□□ 0.52
CLN3-207ENST00000395653 CAPGP40121 348 aa18.3■□□□□ 0.52
CLN3-207ENST00000395653 HNRNPA0Q13151 305 aaKnown RBP18.3■□□□□ 0.52
CLN3-207ENST00000395653 PRAMEF6Q5VXH4 476 aa18.3■□□□□ 0.52
CLN3-207ENST00000395653 KRT74Q7RTS7 529 aa18.3■□□□□ 0.52
CLN3-207ENST00000395653 COMMD2Q86X83 199 aa18.3■□□□□ 0.52
CLN3-207ENST00000395653 OR8S1Q8NH09 359 aa18.3■□□□□ 0.52
CLN3-207ENST00000395653 RORBQ92753 470 aa18.3■□□□□ 0.52
CLN3-207ENST00000395653 MYCBPQ99417 103 aaPredicted RBP18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms