RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 PPP3CBP16298 524 aa6.59□□□□□ -1.35
VPS13A-202ENST00000357409 MLLT11Q13015 90 aaPredicted RBP6.59□□□□□ -1.35
VPS13A-202ENST00000357409 PHYHD1Q5SRE7 291 aa6.59□□□□□ -1.35
VPS13A-202ENST00000357409 OR4Q3Q8NH05 313 aa6.59□□□□□ -1.35
VPS13A-202ENST00000357409 MOB1AQ9H8S9 216 aa6.59□□□□□ -1.35
VPS13A-202ENST00000357409 SLC35D1Q9NTN3 355 aa6.59□□□□□ -1.35
VPS13A-202ENST00000357409 AURKAIP1Q9NWT8 199 aaPredicted RBP6.59□□□□□ -1.35
VPS13A-202ENST00000357409 CEPT1Q9Y6K0 416 aa6.59□□□□□ -1.35
VPS13A-202ENST00000357409 SPATA31D1Q6ZQQ2 1576 aa6.59□□□□□ -1.35
VPS13A-202ENST00000357409 TMEM212A6NML5 194 aa6.59□□□□□ -1.35
VPS13A-202ENST00000357409 M0QZ24 198 aa6.59□□□□□ -1.35
VPS13A-202ENST00000357409 SOD1P00441 154 aa6.59□□□□□ -1.35
VPS13A-202ENST00000357409 SDHAP31040 664 aa6.59□□□□□ -1.35
VPS13A-202ENST00000357409 ACAA2P42765 397 aaKnown RBP6.59□□□□□ -1.35
VPS13A-202ENST00000357409 SLC25A35Q3KQZ1 300 aa6.59□□□□□ -1.35
VPS13A-202ENST00000357409 UBE2NLQ5JXB2 153 aa6.59□□□□□ -1.35
VPS13A-202ENST00000357409 HSD17B13Q7Z5P4 300 aaPredicted RBP6.59□□□□□ -1.35
VPS13A-202ENST00000357409 MOGAT3Q86VF5 341 aa6.59□□□□□ -1.35
VPS13A-202ENST00000357409 OSR2Q8N2R0 312 aa6.59□□□□□ -1.35
VPS13A-202ENST00000357409 ARHGEF39Q8N4T4 335 aa6.59□□□□□ -1.35
VPS13A-202ENST00000357409 RTP4Q96DX8 246 aa6.59□□□□□ -1.35
VPS13A-202ENST00000357409 C20orf85Q9H1P6 137 aa6.59□□□□□ -1.35
VPS13A-202ENST00000357409 MED17Q9NVC6 651 aa6.59□□□□□ -1.35
VPS13A-202ENST00000357409 SLC25A37Q9NYZ2 338 aa6.59□□□□□ -1.35
VPS13A-202ENST00000357409 LAMP3Q9UQV4 416 aa6.59□□□□□ -1.35
VPS13A-202ENST00000357409 CSF1P09603 554 aa6.59□□□□□ -1.35
VPS13A-202ENST00000357409 ZNF17P17021 662 aa6.59□□□□□ -1.35
VPS13A-202ENST00000357409 LYZP61626 148 aa6.59□□□□□ -1.35
VPS13A-202ENST00000357409 DGCR2P98153 550 aa6.59□□□□□ -1.35
VPS13A-202ENST00000357409 PCK2Q16822 640 aa6.59□□□□□ -1.35
VPS13A-202ENST00000357409 HTN3P15516 51 aa6.59□□□□□ -1.36
VPS13A-202ENST00000357409 SPI1P17947 270 aa6.59□□□□□ -1.36
VPS13A-202ENST00000357409 MFGE8Q08431 387 aaPredicted RBP6.59□□□□□ -1.36
VPS13A-202ENST00000357409 FZD2Q14332 565 aa6.59□□□□□ -1.36
VPS13A-202ENST00000357409 TINAGQ9UJW2 476 aa6.59□□□□□ -1.36
VPS13A-202ENST00000357409 ZNF487B1APH4 448 aa6.59□□□□□ -1.36
VPS13A-202ENST00000357409 FGF7P21781 194 aa6.59□□□□□ -1.36
VPS13A-202ENST00000357409 CYCSP99999 105 aaKnown RBP6.59□□□□□ -1.36
VPS13A-202ENST00000357409 ELFN2Q5R3F8 820 aa6.59□□□□□ -1.36
VPS13A-202ENST00000357409 STPG1Q5TH74 334 aa6.59□□□□□ -1.36
VPS13A-202ENST00000357409 SH2D5Q6ZV89 423 aa6.59□□□□□ -1.36
VPS13A-202ENST00000357409 UBALD2Q8IYN6 164 aa6.59□□□□□ -1.36
VPS13A-202ENST00000357409 DNAJC22Q8N4W6 341 aa6.59□□□□□ -1.36
VPS13A-202ENST00000357409 LINC01560Q8TB33 94 aa6.59□□□□□ -1.36
VPS13A-202ENST00000357409 LRRC29Q8WV35 223 aa6.59□□□□□ -1.36
VPS13A-202ENST00000357409 MCHR2Q969V1 340 aa6.59□□□□□ -1.36
VPS13A-202ENST00000357409 DMRTA2Q96SC8 542 aa6.59□□□□□ -1.36
VPS13A-202ENST00000357409 C11orf54Q9H0W9 315 aaPredicted RBP6.59□□□□□ -1.36
VPS13A-202ENST00000357409 UBE2L5PA0A1B0GUS4 154 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 OR4A8P0C604 315 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 CSN1S1P47710 185 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 LSM11P83369 360 aaKnown RBP eCLIP6.58□□□□□ -1.36
VPS13A-202ENST00000357409 TIAL1Q01085 375 aaKnown RBP eCLIP6.58□□□□□ -1.36
VPS13A-202ENST00000357409 LRRC10Q5BKY1 277 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 RPL22L1Q6P5R6 122 aaKnown RBP6.58□□□□□ -1.36
VPS13A-202ENST00000357409 ARPC5LQ9BPX5 153 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 ATPIF1Q9UII2 106 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 CDIPTO14735 213 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 ZNF354AO60765 605 aaPredicted RBP6.58□□□□□ -1.36
VPS13A-202ENST00000357409 HTR1FP30939 366 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 CAMPP49913 170 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 FGF8P55075 233 aaPredicted RBP6.58□□□□□ -1.36
VPS13A-202ENST00000357409 RAC1P63000 192 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 ECSCRQ19T08 205 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 Q499Y3 187 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 LINC01555Q8NAE3 123 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 GALMQ96C23 342 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 OXGR1Q96P68 337 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 LHX9Q9NQ69 397 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 AK3Q9UIJ7 227 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 GPR137BO60478 399 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 HPNP05981 417 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 CR2P20023 1033 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 MGAT2Q10469 447 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 SLC35E4Q6ICL7 350 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 ASB17Q8WXJ9 295 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 LOC389332A0A1B0GUA5 103 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 LOC102723971A0A1B0GUV8 181 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 OR1B1Q8NGR6 318 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 SGK494Q96LW2 274 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 ATP1B1P05026 303 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 ALPLP05186 524 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 OR3A1P47881 315 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 FNDC7Q5VTL7 733 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 TP53I13Q8NBR0 393 aaPredicted RBP6.58□□□□□ -1.36
VPS13A-202ENST00000357409 YIPF5Q969M3 257 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 TM4SF19Q96DZ7 209 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 ASB4Q9Y574 426 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 SMIM17P0DL12 118 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 CNR1P21554 472 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 PSMB3P49720 205 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 EMP1P54849 157 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 DSCR4P56555 118 aaPredicted RBP6.58□□□□□ -1.36
VPS13A-202ENST00000357409 OR2AK2Q8NG84 335 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 OR1M1Q8NGA1 313 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 GUCD1Q96NT3 240 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 SPACA1Q9HBV2 294 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 SLC6A13Q9NSD5 602 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 PSORS1C1Q9UIG5 152 aa6.58□□□□□ -1.36
VPS13A-202ENST00000357409 TO15178 435 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms