RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 CST11Q9H112 138 aa9.1□□□□□ -0.95
LIMA1-201ENST00000341247 SCPEP1Q9HB40 452 aa9.1□□□□□ -0.95
LIMA1-201ENST00000341247 ZNF407Q9C0G0 2248 aa9.1□□□□□ -0.95
LIMA1-201ENST00000341247 DISC1C4P0D8 188 aa9.1□□□□□ -0.95
LIMA1-201ENST00000341247 DHHO43323 396 aa9.1□□□□□ -0.95
LIMA1-201ENST00000341247 BPNT1O95861 308 aa9.1□□□□□ -0.95
LIMA1-201ENST00000341247 PPP3CBP16298 524 aa9.1□□□□□ -0.95
LIMA1-201ENST00000341247 CD34P28906 385 aa9.1□□□□□ -0.95
LIMA1-201ENST00000341247 QRFPP83859 136 aa9.1□□□□□ -0.95
LIMA1-201ENST00000341247 BAMBIQ13145 260 aa9.1□□□□□ -0.95
LIMA1-201ENST00000341247 ENDOGQ14249 297 aaKnown RBP9.1□□□□□ -0.95
LIMA1-201ENST00000341247 TOR2AQ5JU69 321 aa9.1□□□□□ -0.95
LIMA1-201ENST00000341247 DCAF12Q5T6F0 453 aa9.1□□□□□ -0.95
LIMA1-201ENST00000341247 SPINK14Q6IE38 97 aa9.1□□□□□ -0.95
LIMA1-201ENST00000341247 BATF2Q8N1L9 274 aa9.1□□□□□ -0.95
LIMA1-201ENST00000341247 PNPLA2Q96AD5 504 aa9.1□□□□□ -0.95
LIMA1-201ENST00000341247 ARHGAP5-AS1Q96IT6 56 aa9.1□□□□□ -0.95
LIMA1-201ENST00000341247 LPAR5Q9H1C0 372 aa9.1□□□□□ -0.95
LIMA1-201ENST00000341247 OR2AT4A6NND4 320 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 SULT1C2O00338 296 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 SDCBPO00560 298 aaPredicted RBP9.09□□□□□ -0.95
LIMA1-201ENST00000341247 SSX5O60225 188 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 HTR3BO95264 441 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 B4GALT1P15291 398 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 H3F3AP84243 136 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 PPP1R1AQ13522 171 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 ESCO2Q56NI9 601 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 TMUB2Q71RG4 321 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 HDDC2Q7Z4H3 204 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 PPP1R32Q7Z5V6 425 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 CCDC107Q8WV48 283 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 RAB3CQ96E17 227 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 FBXO17Q96EF6 278 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 NELFAQ9H3P2 528 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 CRLF2Q9HC73 371 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 TCFL5Q9UL49 500 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 PIGLQ9Y2B2 252 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 EP300Q09472 2414 aaPredicted RBP9.09□□□□□ -0.95
LIMA1-201ENST00000341247 RPS10-NUDT3A0A1W2PQS6 291 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 YKT6O15498 198 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 RAD51DO75771 328 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 PMS2P2O95744 297 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 CD63P08962 238 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 FCGR2AP12318 317 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 HIST3H3Q16695 136 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 SNAI3Q3KNW1 292 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 RAB12Q6IQ22 244 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 BEST3Q8N1M1 668 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 ADPRHL1Q8NDY3 354 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 OR51T1Q8NGJ9 327 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 AKR7LQ8NHP1 331 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 M1APQ8TC57 530 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 MARCH1Q8TCQ1 289 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 ZNF845Q96IR2 970 aaPredicted RBP9.09□□□□□ -0.95
LIMA1-201ENST00000341247 KCNN3Q9UGI6 736 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 EEF1E1-BLOC1S5C9J1V9 151 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 CDC14BO60729 498 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 HOXA6P31267 233 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 NPY4RP50391 375 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 MECP2P51608 486 aaKnown RBP9.09□□□□□ -0.95
LIMA1-201ENST00000341247 SUCLG1P53597 346 aaKnown RBP9.09□□□□□ -0.95
LIMA1-201ENST00000341247 HLXQ14774 488 aaPredicted RBP9.09□□□□□ -0.95
LIMA1-201ENST00000341247 ZIC4Q8N9L1 334 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 GJC3Q8NFK1 279 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 OR4K15Q8NH41 348 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 CT55Q8WUE5 264 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 CCDC120Q96HB5 630 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 PIGQQ9BRB3 760 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 MFFQ9GZY8 342 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 GPR173Q9NS66 373 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 DEPPQ9NTK1 212 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 ZNF224Q9NZL3 707 aa9.09□□□□□ -0.95
LIMA1-201ENST00000341247 FREM1Q5H8C1 2179 aa9.09□□□□□ -0.96
LIMA1-201ENST00000341247 DOCK10Q96BY6 2186 aa9.09□□□□□ -0.96
LIMA1-201ENST00000341247 CCDC187A0A096LP49 1063 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 C13orf42A0A1B0GVH6 325 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 PINLYPA6NC86 204 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 OR14I1A6ND48 311 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 M0R135 149 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 CBR3O75828 277 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 ERCC1P07992 297 aaPredicted RBP9.08□□□□□ -0.96
LIMA1-201ENST00000341247 JMJD7P0C870 316 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 RAB6AP20340 208 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 GDF1P27539 372 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 TMEM50BP56557 158 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 CARD18P57730 90 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 CSNK2A1P68400 391 aaPredicted RBP9.08□□□□□ -0.96
LIMA1-201ENST00000341247 KISS1Q15726 138 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 UBE2V2Q15819 145 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 NKAPLQ5M9Q1 402 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 LY6G6FQ5SQ64 297 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 ZNF774Q6NX45 483 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 DOK3Q7L591 496 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 OR14K1Q8NGZ2 314 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 MRGPRFQ96AM1 343 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 ZNF799Q96GE5 643 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 RADILQ96JH8 1075 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 SLC25A21Q9BQT8 299 aaPredicted RBP9.08□□□□□ -0.96
LIMA1-201ENST00000341247 UQCC2Q9BRT2 126 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 NAA11Q9BSU3 229 aaPredicted RBP9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms