RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 ITGB1BP1O14713 200 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 TSPAN2O60636 221 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 AIFM1O95831 613 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 PRNPP04156 253 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 GUSBP08236 651 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 NR2F1P10589 423 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 ERGP11308 486 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 ATP1B2P14415 290 aaPredicted RBP4.96□□□□□ -1.62
CSDE1-202ENST00000339438 GABRR1P24046 479 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 PRSS3P35030 304 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 CDKN1BP46527 198 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 FHITP49789 147 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 PDLIM4P50479 330 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 CLDN2P57739 230 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 TBPL1P62380 186 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 FAM3AP98173 230 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 ELAVL3Q14576 367 aaKnown RBP4.96□□□□□ -1.62
CSDE1-202ENST00000339438 ELOCQ15369 112 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 MOGAT2Q3SYC2 334 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 MIDNQ504T8 468 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 ARSJQ5FYB0 599 aaPredicted RBP4.96□□□□□ -1.62
CSDE1-202ENST00000339438 PEG10Q86TG7 708 aaKnown RBP4.96□□□□□ -1.62
CSDE1-202ENST00000339438 ZNF101Q8IZC7 436 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 ACBD4Q8NC06 268 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 OR51D1Q8NGF3 324 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 ZPLD1Q8TCW7 415 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 SFXN5Q8TD22 340 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 SAP25Q8TEE9 199 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 OR10C1Q96KK4 312 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 JSRP1Q96MG2 331 aaPredicted RBP4.96□□□□□ -1.62
CSDE1-202ENST00000339438 NMNAT2Q9BZQ4 307 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 RGCCQ9H4X1 137 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 LPAR2Q9HBW0 351 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 TM7SF3Q9NS93 570 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 UPB1Q9UBR1 384 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 ZNF346Q9UL40 294 aaKnown RBP4.96□□□□□ -1.62
CSDE1-202ENST00000339438 SRPK3Q9UPE1 567 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 CHTOPQ9Y3Y2 248 aaKnown RBP4.96□□□□□ -1.62
CSDE1-202ENST00000339438 EP300Q09472 2414 aaPredicted RBP4.96□□□□□ -1.62
CSDE1-202ENST00000339438 TRAV18A0A075B6X5 111 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 ELOA3DA6NLF2 546 aaPredicted RBP4.96□□□□□ -1.62
CSDE1-202ENST00000339438 CEACAM18A8MTB9 384 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 A8MXE2 369 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 EEF1E1-BLOC1S5C9J1V9 151 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 H0Y8X5 98 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 SYT7O43581 403 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 NGFRP08138 427 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 OR5H8P0DN80 308 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 BRS3P32247 399 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 CX3CR1P49238 355 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 C2orf76Q3KRA6 126 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 FAM46CQ5VWP2 391 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 TMEM183AQ8IXX5 376 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 ZNF595Q8IYB9 648 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 ZDHHC22Q8N966 263 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 ZNF248Q8NDW4 579 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 OR4S1Q8NGB4 309 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 ZMYND19Q96E35 227 aaPredicted RBP4.96□□□□□ -1.62
CSDE1-202ENST00000339438 SLC35G5Q96KT7 338 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 SLC35B3Q9H1N7 401 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 SLC17A5Q9NRA2 495 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 CBLN4Q9NTU7 201 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 CALML5Q9NZT1 146 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 FOXD3Q9UJU5 478 aaPredicted RBP4.96□□□□□ -1.62
CSDE1-202ENST00000339438 KLHDC2Q9Y2U9 406 aa4.96□□□□□ -1.62
CSDE1-202ENST00000339438 C1QTNF3-AMACRE9PGA6 284 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 M0R036 132 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 PEX12O00623 359 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 TSPAN6O43657 245 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 AMY2AP04746 511 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 ERCC1P07992 297 aaPredicted RBP4.95□□□□□ -1.62
CSDE1-202ENST00000339438 ERVFC1-1P60608 527 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 ZFP36L1Q07352 338 aaKnown RBP4.95□□□□□ -1.62
CSDE1-202ENST00000339438 CST6Q15828 149 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 Q499Y3 187 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 SLC22A6Q4U2R8 563 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 HIKESHIQ53FT3 197 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 LINC01590Q5TEZ4 76 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 PRAMEF17Q5VTA0 474 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 AADACL3Q5VUY0 350 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 TRAM1L1Q8N609 369 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 COMMD1Q8N668 190 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 POC1AQ8NBT0 407 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 OR13C3Q8NGS6 347 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 MAFIPQ8WZ33 124 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 DTD2Q96FN9 168 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 SLC41A2Q96JW4 573 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 CCNL2Q96S94 520 aaPredicted RBP4.95□□□□□ -1.62
CSDE1-202ENST00000339438 POTEKPQ9BYX7 375 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 FBRSQ9HAH7 460 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 LRFN1Q9P244 771 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 IL17BQ9UHF5 180 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 GNG8Q9UK08 70 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 PLAGL1Q9UM63 463 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 FBXO7Q9Y3I1 522 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 PTPRZ1P23471 2315 aaPredicted RBP4.95□□□□□ -1.62
CSDE1-202ENST00000339438 LOC100509620A0A075B734 347 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 TCRBV21S2A2A0A5A6 115 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 LNP1A1A4G5 178 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 METTL12A8MUP2 240 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms