RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 G6PC2Q9NQR9 355 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 ZNF275Q9NSD4 429 aaPredicted RBP13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 IL19Q9UHD0 177 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 CACNG2Q9Y698 323 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 IGHV3-64DA0A0J9YX35 117 aa13.47□□□□□ -0.25
CCDC28A-201ENST00000332797 ANKRD30BLA7E2S9 258 aa13.47□□□□□ -0.25
CCDC28A-201ENST00000332797 VWC2LB2RUY7 222 aa13.47□□□□□ -0.25
CCDC28A-201ENST00000332797 J3QLW9 94 aa13.47□□□□□ -0.25
CCDC28A-201ENST00000332797 RP2O75695 350 aa13.47□□□□□ -0.25
CCDC28A-201ENST00000332797 TTRP02766 147 aa13.47□□□□□ -0.25
CCDC28A-201ENST00000332797 TACSTD2P09758 323 aa13.47□□□□□ -0.25
CCDC28A-201ENST00000332797 ZNF19P17023 458 aa13.47□□□□□ -0.25
CCDC28A-201ENST00000332797 TNFRSF1AP19438 455 aa13.47□□□□□ -0.25
CCDC28A-201ENST00000332797 GIFP27352 417 aa13.47□□□□□ -0.25
CCDC28A-201ENST00000332797 PSMB10P40306 273 aa13.47□□□□□ -0.25
CCDC28A-201ENST00000332797 NR4A2P43354 598 aa13.47□□□□□ -0.25
CCDC28A-201ENST00000332797 SRP9P49458 86 aaKnown RBP13.47□□□□□ -0.25
CCDC28A-201ENST00000332797 OR12D2P58182 307 aa13.47□□□□□ -0.25
CCDC28A-201ENST00000332797 ACTA2P62736 377 aa13.47□□□□□ -0.25
CCDC28A-201ENST00000332797 ACTG2P63267 376 aa13.47□□□□□ -0.25
CCDC28A-201ENST00000332797 RIN1Q13671 783 aa13.47□□□□□ -0.25
CCDC28A-201ENST00000332797 GALEQ14376 348 aa13.47□□□□□ -0.25
CCDC28A-201ENST00000332797 OR8B8Q15620 311 aa13.47□□□□□ -0.25
CCDC28A-201ENST00000332797 HFEQ30201 348 aa13.47□□□□□ -0.25
CCDC28A-201ENST00000332797 CATSPERDQ86XM0 798 aa13.47□□□□□ -0.25
CCDC28A-201ENST00000332797 ZNF540Q8NDQ6 660 aa13.47□□□□□ -0.25
CCDC28A-201ENST00000332797 CCL17Q92583 94 aa13.47□□□□□ -0.25
CCDC28A-201ENST00000332797 RORBQ92753 470 aa13.47□□□□□ -0.25
CCDC28A-201ENST00000332797 FAM71F1Q96KD3 344 aaPredicted RBP13.47□□□□□ -0.25
CCDC28A-201ENST00000332797 MEGF10Q96KG7 1140 aa13.47□□□□□ -0.25
CCDC28A-201ENST00000332797 SLC22A4Q9H015 551 aa13.47□□□□□ -0.25
CCDC28A-201ENST00000332797 GPR84Q9NQS5 396 aa13.47□□□□□ -0.25
CCDC28A-201ENST00000332797 INPP5EQ9NRR6 644 aa13.47□□□□□ -0.25
CCDC28A-201ENST00000332797 SLC22A13Q9Y226 551 aa13.47□□□□□ -0.25
CCDC28A-201ENST00000332797 NOP16Q9Y3C1 178 aaKnown RBP13.47□□□□□ -0.25
CCDC28A-201ENST00000332797 A0A1B0GWJ7 208 aa13.46□□□□□ -0.25
CCDC28A-201ENST00000332797 IRGMA1A4Y4 181 aa13.46□□□□□ -0.25
CCDC28A-201ENST00000332797 INHBBP09529 407 aa13.46□□□□□ -0.25
CCDC28A-201ENST00000332797 ACKR3P25106 362 aa13.46□□□□□ -0.25
CCDC28A-201ENST00000332797 VHLP40337 213 aa13.46□□□□□ -0.25
CCDC28A-201ENST00000332797 GPR6P46095 362 aaPredicted RBP13.46□□□□□ -0.25
CCDC28A-201ENST00000332797 HNRNPA0Q13151 305 aaKnown RBP13.46□□□□□ -0.25
CCDC28A-201ENST00000332797 ODF4Q2M2E3 257 aa13.46□□□□□ -0.25
CCDC28A-201ENST00000332797 KCTD20Q7Z5Y7 419 aa13.46□□□□□ -0.25
CCDC28A-201ENST00000332797 ELMOD2Q8IZ81 293 aa13.46□□□□□ -0.25
CCDC28A-201ENST00000332797 CSNK2A3Q8NEV1 391 aa13.46□□□□□ -0.25
CCDC28A-201ENST00000332797 FBLIM1Q8WUP2 373 aa13.46□□□□□ -0.25
CCDC28A-201ENST00000332797 C4orf36Q96KX1 117 aa13.46□□□□□ -0.25
CCDC28A-201ENST00000332797 MYCBPQ99417 103 aaPredicted RBP13.46□□□□□ -0.25
CCDC28A-201ENST00000332797 PAPOLGQ9BWT3 736 aaKnown RBP13.46□□□□□ -0.25
CCDC28A-201ENST00000332797 FGF20Q9NP95 211 aaPredicted RBP13.46□□□□□ -0.25
CCDC28A-201ENST00000332797 ERVK13-1Q9NX77 482 aa13.46□□□□□ -0.25
CCDC28A-201ENST00000332797 RHBDD3Q9Y3P4 386 aa13.46□□□□□ -0.25
CCDC28A-201ENST00000332797 F8P00451 2351 aa13.45□□□□□ -0.26
CCDC28A-201ENST00000332797 A0A096LNT2 108 aa13.45□□□□□ -0.26
CCDC28A-201ENST00000332797 P2RY10O00398 339 aa13.45□□□□□ -0.26
CCDC28A-201ENST00000332797 PPIHO43447 177 aaKnown RBP13.45□□□□□ -0.26
CCDC28A-201ENST00000332797 XPNPEP2O43895 674 aa13.45□□□□□ -0.26
CCDC28A-201ENST00000332797 GMDSO60547 372 aa13.45□□□□□ -0.26
CCDC28A-201ENST00000332797 FOSL1P15407 271 aa13.45□□□□□ -0.26
CCDC28A-201ENST00000332797 GNALP38405 381 aa13.45□□□□□ -0.26
CCDC28A-201ENST00000332797 HSPA13P48723 471 aa13.45□□□□□ -0.26
CCDC28A-201ENST00000332797 LAIR2Q6ISS4 152 aa13.45□□□□□ -0.26
CCDC28A-201ENST00000332797 FTMTQ8N4E7 242 aa13.45□□□□□ -0.26
CCDC28A-201ENST00000332797 PPP1R3CQ9UQK1 317 aa13.45□□□□□ -0.26
CCDC28A-201ENST00000332797 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.44□□□□□ -0.26
CCDC28A-201ENST00000332797 CLDN25C9JDP6 229 aa13.44□□□□□ -0.26
CCDC28A-201ENST00000332797 IGLV3-1P01715 115 aa13.44□□□□□ -0.26
CCDC28A-201ENST00000332797 USF1P22415 310 aaPredicted RBP13.44□□□□□ -0.26
CCDC28A-201ENST00000332797 DCKP27707 260 aa13.44□□□□□ -0.26
CCDC28A-201ENST00000332797 CD200P41217 278 aa13.44□□□□□ -0.26
CCDC28A-201ENST00000332797 MAP2K3P46734 347 aa13.44□□□□□ -0.26
CCDC28A-201ENST00000332797 TMEM33P57088 247 aa13.44□□□□□ -0.26
CCDC28A-201ENST00000332797 SNCBQ16143 134 aa13.44□□□□□ -0.26
CCDC28A-201ENST00000332797 WDR38Q5JTN6 314 aa13.44□□□□□ -0.26
CCDC28A-201ENST00000332797 MOGAT3Q86VF5 341 aa13.44□□□□□ -0.26
CCDC28A-201ENST00000332797 PRSS35Q8N3Z0 413 aa13.44□□□□□ -0.26
CCDC28A-201ENST00000332797 BPIFB6Q8NFQ5 453 aa13.44□□□□□ -0.26
CCDC28A-201ENST00000332797 OR8S1Q8NH09 359 aa13.44□□□□□ -0.26
CCDC28A-201ENST00000332797 GGHQ92820 318 aa13.44□□□□□ -0.26
CCDC28A-201ENST00000332797 ZNF649Q9BS31 505 aa13.44□□□□□ -0.26
CCDC28A-201ENST00000332797 JAM3Q9BX67 310 aa13.44□□□□□ -0.26
CCDC28A-201ENST00000332797 ISG20L2Q9H9L3 353 aaKnown RBP13.44□□□□□ -0.26
CCDC28A-201ENST00000332797 TANC2Q9HCD6 1990 aa13.44□□□□□ -0.26
CCDC28A-201ENST00000332797 IGHV4-61A0A0C4DH41 118 aa13.43□□□□□ -0.26
CCDC28A-201ENST00000332797 EFCAB10A6NFE3 127 aa13.43□□□□□ -0.26
CCDC28A-201ENST00000332797 H3BSH0 61 aa13.43□□□□□ -0.26
CCDC28A-201ENST00000332797 DHRS3O75911 302 aa13.43□□□□□ -0.26
CCDC28A-201ENST00000332797 HTR1AP08908 422 aa13.43□□□□□ -0.26
CCDC28A-201ENST00000332797 LIMS3P0CW19 117 aa13.43□□□□□ -0.26
CCDC28A-201ENST00000332797 LIMS4P0CW20 117 aa13.43□□□□□ -0.26
CCDC28A-201ENST00000332797 RBMXP38159 391 aaKnown RBP13.43□□□□□ -0.26
CCDC28A-201ENST00000332797 KIR3DL2P43630 455 aa13.43□□□□□ -0.26
CCDC28A-201ENST00000332797 ETV1P50549 477 aa13.43□□□□□ -0.26
CCDC28A-201ENST00000332797 MVKQ03426 396 aa13.43□□□□□ -0.26
CCDC28A-201ENST00000332797 LOXL1Q08397 574 aaPredicted RBP13.43□□□□□ -0.26
CCDC28A-201ENST00000332797 PRDX4Q13162 271 aa13.43□□□□□ -0.26
CCDC28A-201ENST00000332797 MAB21L1Q13394 359 aa13.43□□□□□ -0.26
CCDC28A-201ENST00000332797 AVPI1Q5T686 147 aa13.43□□□□□ -0.26
CCDC28A-201ENST00000332797 PRAMEF6Q5VXH4 476 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms