RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 LYRM1O43325 122 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 S100A9P06702 114 aaKnown RBP12.47□□□□□ -0.41
C9orf3-202ENST00000297979 FCGR2AP12318 317 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 IFITM2Q01629 132 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 TBRG1Q3YBR2 411 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 TMEM69Q5SWH9 247 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 ZNF529Q6P280 563 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 DRAM2Q6UX65 266 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 SLC25A28Q96A46 364 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 NKX3-1Q99801 234 aaPredicted RBP12.47□□□□□ -0.41
C9orf3-202ENST00000297979 OR2H1Q9GZK4 316 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 UPB1Q9UBR1 384 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 C5orf63A6NC05 138 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 OR6C6A6NF89 314 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 GSTZ1O43708 216 aaPredicted RBP12.47□□□□□ -0.41
C9orf3-202ENST00000297979 TGM6O95932 706 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 PATE4P0C8F1 98 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 RAB3AP20336 220 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 CDK2P24941 298 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 TPTEP56180 551 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 RAB14P61106 215 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 ARF1P84077 181 aaKnown RBP12.47□□□□□ -0.41
C9orf3-202ENST00000297979 DGCR2P98153 550 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 PSG4Q00888 419 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 PLA2G7Q13093 441 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 C2orf76Q3KRA6 126 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 ZNF100Q8IYN0 542 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 UBE2J2Q8N2K1 259 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 CELF2-AS1Q8N7Q2 184 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 GALNT11Q8NCW6 608 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 AKR7LQ8NHP1 331 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 SNIP1Q8TAD8 396 aaKnown RBP12.47□□□□□ -0.41
C9orf3-202ENST00000297979 YIPF5Q969M3 257 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 NUDT16L1Q9BRJ7 211 aaKnown RBP12.47□□□□□ -0.41
C9orf3-202ENST00000297979 PRDM14Q9GZV8 571 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 PLEKHA1Q9HB21 404 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 POU2F3Q9UKI9 436 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 CELSR3Q9NYQ7 3312 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 ZNF98A6NK75 572 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 ABOP16442 354 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 HTR5AP47898 357 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 ODF1Q14990 250 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 C1orf100Q5SVJ3 147 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 RAB12Q6IQ22 244 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 IGFL3Q6UXB1 125 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 PGAP1Q75T13 922 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 NUFIP2Q7Z417 695 aaKnown RBP12.47□□□□□ -0.41
C9orf3-202ENST00000297979 LYPD6Q86Y78 171 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 OR13C9Q8NGT0 318 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 OR14K1Q8NGZ2 314 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 SMIM4Q8WVI0 70 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 LYZL4Q96KX0 146 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 SORCS2Q96PQ0 1159 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 GP6Q9HCN6 339 aa12.47□□□□□ -0.41
C9orf3-202ENST00000297979 RBFOX1Q9NWB1 397 aaKnown RBP12.47□□□□□ -0.41
C9orf3-202ENST00000297979 DBX1A6NMT0 343 aa12.46□□□□□ -0.41
C9orf3-202ENST00000297979 ERCC1P07992 297 aaPredicted RBP12.46□□□□□ -0.41
C9orf3-202ENST00000297979 SPINK2P20155 84 aa12.46□□□□□ -0.41
C9orf3-202ENST00000297979 MNDAP41218 407 aa12.46□□□□□ -0.41
C9orf3-202ENST00000297979 ZNF169Q14929 603 aaPredicted RBP12.46□□□□□ -0.41
C9orf3-202ENST00000297979 RNASE12Q5GAN4 147 aaKnown RBP12.46□□□□□ -0.41
C9orf3-202ENST00000297979 OR52H1Q8NGJ2 320 aa12.46□□□□□ -0.41
C9orf3-202ENST00000297979 FGFBP3Q8TAT2 258 aa12.46□□□□□ -0.41
C9orf3-202ENST00000297979 ZC3HAV1LQ96H79 300 aaKnown RBP12.46□□□□□ -0.41
C9orf3-202ENST00000297979 OR10A2Q9H208 303 aa12.46□□□□□ -0.41
C9orf3-202ENST00000297979 KCNK15Q9H427 330 aa12.46□□□□□ -0.41
C9orf3-202ENST00000297979 TMEM272A0A1B0GTI8 110 aa12.46□□□□□ -0.42
C9orf3-202ENST00000297979 AQP7O14520 342 aa12.46□□□□□ -0.42
C9orf3-202ENST00000297979 GFRA3O60609 400 aa12.46□□□□□ -0.42
C9orf3-202ENST00000297979 MMP7P09237 267 aaPredicted RBP12.46□□□□□ -0.42
C9orf3-202ENST00000297979 CD3GP09693 182 aa12.46□□□□□ -0.42
C9orf3-202ENST00000297979 TMIGD3P0DMS9 266 aaPredicted RBP12.46□□□□□ -0.42
C9orf3-202ENST00000297979 ARSBP15848 533 aa12.46□□□□□ -0.42
C9orf3-202ENST00000297979 AGTR1P30556 359 aa12.46□□□□□ -0.42
C9orf3-202ENST00000297979 PTH2RP49190 550 aa12.46□□□□□ -0.42
C9orf3-202ENST00000297979 KRTAP27-1Q3LI81 207 aa12.46□□□□□ -0.42
C9orf3-202ENST00000297979 SFRP5Q5T4F7 317 aa12.46□□□□□ -0.42
C9orf3-202ENST00000297979 ANKRD16Q6P6B7 361 aa12.46□□□□□ -0.42
C9orf3-202ENST00000297979 ZNF627Q7L945 461 aa12.46□□□□□ -0.42
C9orf3-202ENST00000297979 Q8NFD4 153 aa12.46□□□□□ -0.42
C9orf3-202ENST00000297979 OR52N4Q8NGI2 321 aa12.46□□□□□ -0.42
C9orf3-202ENST00000297979 TNRC6AQ8NDV7 1962 aaKnown RBP12.45□□□□□ -0.42
C9orf3-202ENST00000297979 RGS13O14921 159 aa12.45□□□□□ -0.42
C9orf3-202ENST00000297979 GOSR1O95249 250 aa12.45□□□□□ -0.42
C9orf3-202ENST00000297979 KIR2DL3P43628 341 aa12.45□□□□□ -0.42
C9orf3-202ENST00000297979 EFNB2P52799 333 aa12.45□□□□□ -0.42
C9orf3-202ENST00000297979 C9orf135Q5VTT2 229 aa12.45□□□□□ -0.42
C9orf3-202ENST00000297979 P4HA3Q7Z4N8 544 aa12.45□□□□□ -0.42
C9orf3-202ENST00000297979 CCDC54Q8NEL0 328 aa12.45□□□□□ -0.42
C9orf3-202ENST00000297979 C15orf40Q8WUR7 153 aa12.45□□□□□ -0.42
C9orf3-202ENST00000297979 METTL17Q9H7H0 456 aaPredicted RBP12.45□□□□□ -0.42
C9orf3-202ENST00000297979 AUNIPQ9H7T9 357 aa12.45□□□□□ -0.42
C9orf3-202ENST00000297979 RHBDD3Q9Y3P4 386 aa12.45□□□□□ -0.42
C9orf3-202ENST00000297979 CTAG2O75638 210 aa12.45□□□□□ -0.42
C9orf3-202ENST00000297979 DHRS3O75911 302 aa12.45□□□□□ -0.42
C9orf3-202ENST00000297979 CAPZA1P52907 286 aa12.45□□□□□ -0.42
C9orf3-202ENST00000297979 TAS2R20P59543 309 aa12.45□□□□□ -0.42
C9orf3-202ENST00000297979 SNAI3Q3KNW1 292 aa12.45□□□□□ -0.42
C9orf3-202ENST00000297979 SLC36A2Q495M3 483 aa12.45□□□□□ -0.42
C9orf3-202ENST00000297979 ADGRE4PQ86SQ3 457 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms