RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 LTBRP36941 435 aa13.81□□□□□ -0.2
SHH-201ENST00000297261 RIN1Q13671 783 aa13.81□□□□□ -0.2
SHH-201ENST00000297261 FAM209BQ5JX69 171 aa13.81□□□□□ -0.2
SHH-201ENST00000297261 PLCXD3Q63HM9 321 aa13.81□□□□□ -0.2
SHH-201ENST00000297261 MOB3CQ70IA8 216 aa13.81□□□□□ -0.2
SHH-201ENST00000297261 C16orf52Q8NHV5 167 aa13.81□□□□□ -0.2
SHH-201ENST00000297261 PLK3Q9H4B4 646 aa13.81□□□□□ -0.2
SHH-201ENST00000297261 ZNF230Q9UIE0 474 aaPredicted RBP13.81□□□□□ -0.2
SHH-201ENST00000297261 FLVCR1Q9Y5Y0 555 aa13.81□□□□□ -0.2
SHH-201ENST00000297261 PIGBOS1A0A0B4J2F0 54 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 YKT6O15498 198 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 SSBP1Q04837 148 aaKnown RBP13.8□□□□□ -0.2
SHH-201ENST00000297261 EEF1A2Q05639 463 aaKnown RBP13.8□□□□□ -0.2
SHH-201ENST00000297261 PRTGQ2VWP7 1150 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 PUSL1Q8N0Z8 303 aaKnown RBP13.8□□□□□ -0.2
SHH-201ENST00000297261 STPG2Q8N412 459 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 BCORP1Q8N888 145 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 OR4C3Q8NH37 302 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 LILRB1Q8NHL6 650 aaPredicted RBP13.8□□□□□ -0.2
SHH-201ENST00000297261 UBL7Q96S82 380 aaPredicted RBP13.8□□□□□ -0.2
SHH-201ENST00000297261 CHST11Q9NPF2 352 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 SERTAD4Q9NUC0 356 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 MRPS2Q9Y399 296 aaKnown RBP13.8□□□□□ -0.2
SHH-201ENST00000297261 A0A0B4J2E0 115 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 A0A1B0GX12 115 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 CTDSPLO15194 276 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 TBX19O60806 448 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 QDPRP09417 244 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 NFYBP25208 207 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 ABCD3P28288 659 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 ASCL1P50553 236 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 BTG2P78543 158 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 TAF9Q16594 264 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 RPL7L1Q6DKI1 246 aaKnown RBP13.8□□□□□ -0.2
SHH-201ENST00000297261 ULBP2Q9BZM5 246 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 MAGT1Q9H0U3 335 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 PCNTO95613 3336 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 A0A1W2PPH5 198 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 C9orf170A2RU37 121 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 CNN3Q15417 329 aaKnown RBP13.8□□□□□ -0.2
SHH-201ENST00000297261 ZIC1Q15915 447 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 SP6Q3SY56 376 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 RBMS3Q6XE24 437 aaKnown RBP13.8□□□□□ -0.2
SHH-201ENST00000297261 OVCH2Q7RTZ1 564 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 TAAR8Q969N4 342 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 C4orf45Q96LM5 186 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 NUDT9Q9BW91 350 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 PLEKHA3Q9HB20 300 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 MED29Q9NX70 200 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 LMO7DNF2Z398 122 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 AKR7A3O95154 331 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 HOXD4P09016 255 aaPredicted RBP13.8□□□□□ -0.2
SHH-201ENST00000297261 ELLP55199 621 aaPredicted RBP13.8□□□□□ -0.2
SHH-201ENST00000297261 TAS2R30P59541 319 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 COL13A1Q5TAT6 717 aaPredicted RBP13.8□□□□□ -0.2
SHH-201ENST00000297261 ATPAF1Q5TC12 328 aaPredicted RBP13.8□□□□□ -0.2
SHH-201ENST00000297261 ZNF660Q6AZW8 331 aaPredicted RBP13.8□□□□□ -0.2
SHH-201ENST00000297261 FIP1L1Q6UN15 594 aaKnown RBP13.8□□□□□ -0.2
SHH-201ENST00000297261 SLAMF6Q96DU3 332 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 PLEKHA2Q9HB19 425 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 TMEM100Q9NV29 134 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 WNT16Q9UBV4 365 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 CTSFQ9UBX1 484 aa13.8□□□□□ -0.2
SHH-201ENST00000297261 TMEM272A0A1B0GTI8 110 aa13.79□□□□□ -0.2
SHH-201ENST00000297261 PRSS37A4D1T9 235 aa13.79□□□□□ -0.2
SHH-201ENST00000297261 BLACEA4D250 179 aa13.79□□□□□ -0.2
SHH-201ENST00000297261 ZNF727A8MUV8 499 aa13.79□□□□□ -0.2
SHH-201ENST00000297261 GP1BAP07359 652 aa13.79□□□□□ -0.2
SHH-201ENST00000297261 TBXA2RP21731 343 aa13.79□□□□□ -0.2
SHH-201ENST00000297261 PEBP1P30086 187 aaKnown RBP13.79□□□□□ -0.2
SHH-201ENST00000297261 TOMM34Q15785 309 aaPredicted RBP13.79□□□□□ -0.2
SHH-201ENST00000297261 OR2A2Q6IF42 318 aa13.79□□□□□ -0.2
SHH-201ENST00000297261 MARVELD3Q96A59 401 aa13.79□□□□□ -0.2
SHH-201ENST00000297261 MRPS18AQ9NVS2 196 aaKnown RBP13.79□□□□□ -0.2
SHH-201ENST00000297261 E5RGE8 158 aa13.79□□□□□ -0.2
SHH-201ENST00000297261 KCNAB3O43448 404 aa13.79□□□□□ -0.2
SHH-201ENST00000297261 IGHV4-34P06331 123 aa13.79□□□□□ -0.2
SHH-201ENST00000297261 CDKN2AP42771 156 aaKnown RBP13.79□□□□□ -0.2
SHH-201ENST00000297261 DVL1P1P54792 670 aaPredicted RBP13.79□□□□□ -0.2
SHH-201ENST00000297261 OR52N5Q8NH56 324 aa13.79□□□□□ -0.2
SHH-201ENST00000297261 NAT6Q93015 286 aa13.79□□□□□ -0.2
SHH-201ENST00000297261 OR8B4Q96RC9 309 aa13.79□□□□□ -0.2
SHH-201ENST00000297261 OR51B6Q9H340 312 aa13.79□□□□□ -0.2
SHH-201ENST00000297261 GPR84Q9NQS5 396 aa13.79□□□□□ -0.2
SHH-201ENST00000297261 PRR13Q9NZ81 148 aa13.79□□□□□ -0.2
SHH-201ENST00000297261 B9D1Q9UPM9 204 aa13.79□□□□□ -0.2
SHH-201ENST00000297261 NSG2Q9Y328 171 aa13.79□□□□□ -0.2
SHH-201ENST00000297261 SF3B6Q9Y3B4 125 aaKnown RBP13.79□□□□□ -0.2
SHH-201ENST00000297261 DFFBO76075 338 aa13.79□□□□□ -0.2
SHH-201ENST00000297261 IGKV1-8A0A0C4DH67 115 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 OGG1O15527 345 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 CD63P08962 238 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 SMIM6P0DI80 62 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 PTGFRP43088 359 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 CLDN17P56750 224 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 RGS7BPQ6MZT1 257 aaPredicted RBP13.78□□□□□ -0.2
SHH-201ENST00000297261 OR10AC1Q8NH08 325 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 SLC46A1Q96NT5 459 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 RASL12Q9NYN1 266 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 SHISA3A0PJX4 238 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms