RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 OR10K1Q8NGX5 313 aa14.34□□□□□ -0.11
USP4-201ENST00000265560 YIPF5Q969M3 257 aa14.34□□□□□ -0.11
USP4-201ENST00000265560 PLCE1Q9P212 2302 aa14.34□□□□□ -0.11
USP4-201ENST00000265560 CIB4A0PJX0 185 aa14.33□□□□□ -0.11
USP4-201ENST00000265560 RPL36A-HNRNPH2H7BZ11 118 aa14.33□□□□□ -0.11
USP4-201ENST00000265560 SULT1B1O43704 296 aa14.33□□□□□ -0.11
USP4-201ENST00000265560 IGHV1-2P23083 117 aa14.33□□□□□ -0.11
USP4-201ENST00000265560 STOMP27105 288 aa14.33□□□□□ -0.11
USP4-201ENST00000265560 BCAP31P51572 246 aa14.33□□□□□ -0.11
USP4-201ENST00000265560 ZNF627Q7L945 461 aa14.33□□□□□ -0.11
USP4-201ENST00000265560 BHLHE23Q8NDY6 225 aa14.33□□□□□ -0.11
USP4-201ENST00000265560 TRIM63Q969Q1 353 aa14.33□□□□□ -0.11
USP4-201ENST00000265560 OPN3Q9H1Y3 402 aaPredicted RBP14.33□□□□□ -0.11
USP4-201ENST00000265560 BANF2Q9H503 90 aa14.33□□□□□ -0.11
USP4-201ENST00000265560 ZNF175Q9Y473 711 aa14.33□□□□□ -0.11
USP4-201ENST00000265560 LOC100289279A0A1B0GTE1 492 aa14.33□□□□□ -0.12
USP4-201ENST00000265560 CTAG2O75638 210 aa14.33□□□□□ -0.12
USP4-201ENST00000265560 DHRS3O75911 302 aa14.33□□□□□ -0.12
USP4-201ENST00000265560 PTTG1O95997 202 aa14.33□□□□□ -0.12
USP4-201ENST00000265560 FCGR2AP12318 317 aa14.33□□□□□ -0.12
USP4-201ENST00000265560 OR3A2P47893 321 aa14.33□□□□□ -0.12
USP4-201ENST00000265560 AWAT2Q6E213 333 aa14.33□□□□□ -0.12
USP4-201ENST00000265560 TFAP2EQ6VUC0 442 aa14.33□□□□□ -0.12
USP4-201ENST00000265560 SEM1Q6ZVN7 128 aa14.33□□□□□ -0.12
USP4-201ENST00000265560 CD163Q86VB7 1156 aa14.33□□□□□ -0.12
USP4-201ENST00000265560 HAVCR1Q96D42 359 aa14.33□□□□□ -0.12
USP4-201ENST00000265560 PLSCR2Q9NRY7 297 aa14.33□□□□□ -0.12
USP4-201ENST00000265560 ZNF629Q9UEG4 869 aaPredicted RBP14.33□□□□□ -0.12
USP4-201ENST00000265560 POLEQ07864 2286 aa14.33□□□□□ -0.12
USP4-201ENST00000265560 TOXO94900 526 aa14.32□□□□□ -0.12
USP4-201ENST00000265560 AGFG2O95081 481 aa14.32□□□□□ -0.12
USP4-201ENST00000265560 MPGP29372 298 aa14.32□□□□□ -0.12
USP4-201ENST00000265560 IGFBP7Q16270 282 aa14.32□□□□□ -0.12
USP4-201ENST00000265560 SPATA46Q5T0L3 261 aa14.32□□□□□ -0.12
USP4-201ENST00000265560 MDP1Q86V88 176 aa14.32□□□□□ -0.12
USP4-201ENST00000265560 ZNF101Q8IZC7 436 aa14.32□□□□□ -0.12
USP4-201ENST00000265560 THRSPQ92748 146 aa14.32□□□□□ -0.12
USP4-201ENST00000265560 DVL3Q92997 716 aaPredicted RBP14.32□□□□□ -0.12
USP4-201ENST00000265560 ABCG5Q9H222 651 aa14.32□□□□□ -0.12
USP4-201ENST00000265560 COL12A1Q99715 3063 aa14.32□□□□□ -0.12
USP4-201ENST00000265560 ESPL1Q14674 2120 aa14.32□□□□□ -0.12
USP4-201ENST00000265560 LYRM1O43325 122 aa14.32□□□□□ -0.12
USP4-201ENST00000265560 TAS2R20P59543 309 aa14.32□□□□□ -0.12
USP4-201ENST00000265560 TMEM104Q8NE00 496 aa14.32□□□□□ -0.12
USP4-201ENST00000265560 OR1K1Q8NGR3 316 aa14.32□□□□□ -0.12
USP4-201ENST00000265560 CRIM1Q9NZV1 1036 aa14.32□□□□□ -0.12
USP4-201ENST00000265560 STK11Q15831 433 aa14.32□□□□□ -0.12
USP4-201ENST00000265560 TBRG1Q3YBR2 411 aa14.32□□□□□ -0.12
USP4-201ENST00000265560 RTL6Q6ICC9 239 aa14.32□□□□□ -0.12
USP4-201ENST00000265560 OR6M1Q8NGM8 313 aa14.32□□□□□ -0.12
USP4-201ENST00000265560 CCDC120Q96HB5 630 aa14.32□□□□□ -0.12
USP4-201ENST00000265560 SP140LQ9H930 580 aa14.32□□□□□ -0.12
USP4-201ENST00000265560 ELL3Q9HB65 397 aaPredicted RBP14.32□□□□□ -0.12
USP4-201ENST00000265560 A0A0U1RQV5 110 aa14.31□□□□□ -0.12
USP4-201ENST00000265560 FAM230AA0A1W2PPH8 454 aa14.31□□□□□ -0.12
USP4-201ENST00000265560 MEGF11A6BM72 1044 aa14.31□□□□□ -0.12
USP4-201ENST00000265560 ORC5O43913 435 aa14.31□□□□□ -0.12
USP4-201ENST00000265560 SS18L1O75177 396 aaPredicted RBP14.31□□□□□ -0.12
USP4-201ENST00000265560 MT-ND4P03905 459 aa14.31□□□□□ -0.12
USP4-201ENST00000265560 CCL1P22362 96 aa14.31□□□□□ -0.12
USP4-201ENST00000265560 ECH1Q13011 328 aa14.31□□□□□ -0.12
USP4-201ENST00000265560 ASAH1Q13510 395 aa14.31□□□□□ -0.12
USP4-201ENST00000265560 GPR176Q14439 515 aa14.31□□□□□ -0.12
USP4-201ENST00000265560 SLC22A6Q4U2R8 563 aa14.31□□□□□ -0.12
USP4-201ENST00000265560 LYPD6Q86Y78 171 aa14.31□□□□□ -0.12
USP4-201ENST00000265560 ZNF610Q8N9Z0 462 aa14.31□□□□□ -0.12
USP4-201ENST00000265560 OR52H1Q8NGJ2 320 aa14.31□□□□□ -0.12
USP4-201ENST00000265560 ENKURQ8TC29 256 aa14.31□□□□□ -0.12
USP4-201ENST00000265560 PHF21AQ96BD5 680 aa14.31□□□□□ -0.12
USP4-201ENST00000265560 SORCS2Q96PQ0 1159 aa14.31□□□□□ -0.12
USP4-201ENST00000265560 SSUH2Q9Y2M2 353 aa14.31□□□□□ -0.12
USP4-201ENST00000265560 RHBDD3Q9Y3P4 386 aa14.31□□□□□ -0.12
USP4-201ENST00000265560 SPTBN1Q01082 2364 aaKnown RBP14.31□□□□□ -0.12
USP4-201ENST00000265560 IDH3GP51553 393 aaPredicted RBP14.31□□□□□ -0.12
USP4-201ENST00000265560 PMPCAQ10713 525 aa14.31□□□□□ -0.12
USP4-201ENST00000265560 UNC119Q13432 240 aa14.31□□□□□ -0.12
USP4-201ENST00000265560 GLIPR1L1Q6UWM5 242 aa14.31□□□□□ -0.12
USP4-201ENST00000265560 Q8NA96 180 aa14.31□□□□□ -0.12
USP4-201ENST00000265560 BCL2L2Q92843 193 aaPredicted RBP14.31□□□□□ -0.12
USP4-201ENST00000265560 NICN1Q9BSH3 213 aa14.31□□□□□ -0.12
USP4-201ENST00000265560 POFUT1Q9H488 388 aa14.31□□□□□ -0.12
USP4-201ENST00000265560 STARD10Q9Y365 291 aa14.31□□□□□ -0.12
USP4-201ENST00000265560 C1QTNF9BB2RNN3 333 aa14.3□□□□□ -0.12
USP4-201ENST00000265560 BOLA2-SMG1P6H3BVE0 249 aa14.3□□□□□ -0.12
USP4-201ENST00000265560 IGLV3-1P01715 115 aa14.3□□□□□ -0.12
USP4-201ENST00000265560 C1QTNF9P0C862 333 aa14.3□□□□□ -0.12
USP4-201ENST00000265560 IL32P24001 234 aa14.3□□□□□ -0.12
USP4-201ENST00000265560 GDNFP39905 211 aa14.3□□□□□ -0.12
USP4-201ENST00000265560 MAP2K3P46734 347 aa14.3□□□□□ -0.12
USP4-201ENST00000265560 GSG1Q2KHT4 349 aa14.3□□□□□ -0.12
USP4-201ENST00000265560 TOMM5Q8N4H5 51 aa14.3□□□□□ -0.12
USP4-201ENST00000265560 SEMA6DQ8NFY4 1073 aa14.3□□□□□ -0.12
USP4-201ENST00000265560 FAM240BA0A1B0GVZ2 78 aa14.3□□□□□ -0.12
USP4-201ENST00000265560 OR6C65A6NJZ3 312 aa14.3□□□□□ -0.12
USP4-201ENST00000265560 VSIG8P0DPA2 414 aa14.3□□□□□ -0.12
USP4-201ENST00000265560 CCR6P51684 374 aa14.3□□□□□ -0.12
USP4-201ENST00000265560 RIN1Q13671 783 aa14.3□□□□□ -0.12
USP4-201ENST00000265560 KISS1Q15726 138 aa14.3□□□□□ -0.12
USP4-201ENST00000265560 FAM180AQ6UWF9 173 aa14.3□□□□□ -0.12
USP4-201ENST00000265560 PIGCQ92535 297 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms