RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 BCL2L14Q9BZR8 327 aa11.24□□□□□ -0.61
LIG1-201ENST00000263274 TRBV11-1A0A0K0K1C0 115 aa11.24□□□□□ -0.61
LIG1-201ENST00000263274 MPTX1A8MV57 137 aa11.24□□□□□ -0.61
LIG1-201ENST00000263274 S100A6P06703 90 aa11.24□□□□□ -0.61
LIG1-201ENST00000263274 TPT1P13693 172 aaKnown RBP11.24□□□□□ -0.61
LIG1-201ENST00000263274 HNRNPKP61978 463 aaKnown RBP eCLIP11.24□□□□□ -0.61
LIG1-201ENST00000263274 H3F3CQ6NXT2 135 aa11.24□□□□□ -0.61
LIG1-201ENST00000263274 UEVLDQ8IX04 471 aa11.24□□□□□ -0.61
LIG1-201ENST00000263274 PAQR4Q8N4S7 273 aaPredicted RBP11.24□□□□□ -0.61
LIG1-201ENST00000263274 BHLHE23Q8NDY6 225 aa11.24□□□□□ -0.61
LIG1-201ENST00000263274 ASB10Q8WXI3 467 aa11.24□□□□□ -0.61
LIG1-201ENST00000263274 JSRP1Q96MG2 331 aaPredicted RBP11.24□□□□□ -0.61
LIG1-201ENST00000263274 PURGQ9UJV8 347 aaKnown RBP11.24□□□□□ -0.61
LIG1-201ENST00000263274 A0A1B0GV50 99 aa11.24□□□□□ -0.61
LIG1-201ENST00000263274 ZNF726A6NNF4 738 aa11.24□□□□□ -0.61
LIG1-201ENST00000263274 IGFBP3P17936 291 aaPredicted RBP11.24□□□□□ -0.61
LIG1-201ENST00000263274 GABRA4P48169 554 aa11.24□□□□□ -0.61
LIG1-201ENST00000263274 C14orf28Q4W4Y0 310 aa11.24□□□□□ -0.61
LIG1-201ENST00000263274 ZNF565Q8N9K5 539 aa11.24□□□□□ -0.61
LIG1-201ENST00000263274 ST7LQ8TDW4 575 aa11.24□□□□□ -0.61
LIG1-201ENST00000263274 TCEAL3Q969E4 200 aa11.24□□□□□ -0.61
LIG1-201ENST00000263274 DDIT4LQ96D03 193 aa11.24□□□□□ -0.61
LIG1-201ENST00000263274 CHST11Q9NPF2 352 aa11.24□□□□□ -0.61
LIG1-201ENST00000263274 MED9Q9NWA0 146 aa11.24□□□□□ -0.61
LIG1-201ENST00000263274 COA4Q9NYJ1 87 aa11.24□□□□□ -0.61
LIG1-201ENST00000263274 EFSO43281 561 aa11.23□□□□□ -0.61
LIG1-201ENST00000263274 ZNF205O95201 554 aa11.23□□□□□ -0.61
LIG1-201ENST00000263274 SERPINA5P05154 406 aa11.23□□□□□ -0.61
LIG1-201ENST00000263274 NME2P22392 152 aa11.23□□□□□ -0.61
LIG1-201ENST00000263274 PLEKHN1Q494U1 663 aaPredicted RBP11.23□□□□□ -0.61
LIG1-201ENST00000263274 LRRC18Q8N456 261 aa11.23□□□□□ -0.61
LIG1-201ENST00000263274 ARHGAP5-AS1Q96IT6 56 aa11.23□□□□□ -0.61
LIG1-201ENST00000263274 PIGMQ9H3S5 423 aa11.23□□□□□ -0.61
LIG1-201ENST00000263274 EHFQ9NZC4 300 aa11.23□□□□□ -0.61
LIG1-201ENST00000263274 SLC5A6Q9Y289 635 aa11.23□□□□□ -0.61
LIG1-201ENST00000263274 WIPF3A6NGB9 483 aa11.23□□□□□ -0.61
LIG1-201ENST00000263274 SULT2B1O00204 365 aa11.23□□□□□ -0.61
LIG1-201ENST00000263274 NME1P15531 152 aaKnown RBP11.23□□□□□ -0.61
LIG1-201ENST00000263274 GLRA1P23415 457 aa11.23□□□□□ -0.61
LIG1-201ENST00000263274 CALCRP30988 508 aa11.23□□□□□ -0.61
LIG1-201ENST00000263274 C17orf67Q0P5P2 114 aa11.23□□□□□ -0.61
LIG1-201ENST00000263274 RAB30Q15771 203 aa11.23□□□□□ -0.61
LIG1-201ENST00000263274 MICBQ29980 383 aa11.23□□□□□ -0.61
LIG1-201ENST00000263274 TMEM176BQ3YBM2 270 aaPredicted RBP11.23□□□□□ -0.61
LIG1-201ENST00000263274 LPCAT3Q6P1A2 487 aa11.23□□□□□ -0.61
LIG1-201ENST00000263274 PLXDC1Q8IUK5 500 aa11.23□□□□□ -0.61
LIG1-201ENST00000263274 SPAG16Q8N0X2 631 aa11.23□□□□□ -0.61
LIG1-201ENST00000263274 PUSL1Q8N0Z8 303 aaKnown RBP11.23□□□□□ -0.61
LIG1-201ENST00000263274 MITD1Q8WV92 249 aa11.23□□□□□ -0.61
LIG1-201ENST00000263274 LIN37Q96GY3 246 aaPredicted RBP11.23□□□□□ -0.61
LIG1-201ENST00000263274 PGAM5Q96HS1 289 aa11.23□□□□□ -0.61
LIG1-201ENST00000263274 SERINC1Q9NRX5 453 aa11.23□□□□□ -0.61
LIG1-201ENST00000263274 KLHL13Q9P2N7 655 aa11.23□□□□□ -0.61
LIG1-201ENST00000263274 OR6C76A6NM76 312 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 DUX1O43812 170 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 ZNF121P58317 390 aaPredicted RBP11.22□□□□□ -0.61
LIG1-201ENST00000263274 SRSF3P84103 164 aaKnown RBP11.22□□□□□ -0.61
LIG1-201ENST00000263274 HFEQ30201 348 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 ZNF813Q6ZN06 617 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 MOB3CQ70IA8 216 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 BAP18Q8IXM2 172 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 ARL11Q969Q4 196 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 NDRG3Q9UGV2 375 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 G3V3Y1 287 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 ABCD4O14678 606 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 ZNF217O75362 1048 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 CRHP06850 196 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 SPP1P10451 314 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 ZNF43P17038 809 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 GABRR1P24046 479 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 BLVRBP30043 206 aaPredicted RBP11.22□□□□□ -0.61
LIG1-201ENST00000263274 TERB2Q8NHR7 220 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 SFT2D1Q8WV19 159 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 AQP3Q92482 292 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 CNTNAP3BQ96NU0 1288 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 CDC6Q99741 560 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 LHX6Q9UPM6 363 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 TEX13DA0A0J9YY54 714 aaPredicted RBP11.22□□□□□ -0.61
LIG1-201ENST00000263274 A0A1B0GX78 115 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 LILRA5A6NI73 299 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 CD8AP01732 235 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 CD74P04233 296 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 SELLP14151 372 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 AKR1C3P42330 323 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 MYBPHQ13203 477 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 RBM39Q14498 530 aaKnown RBP11.22□□□□□ -0.61
LIG1-201ENST00000263274 PABPC1L2AQ5JQF8 200 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 CLEC9AQ6UXN8 241 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 NAA40Q86UY6 237 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 SVBPQ8N300 66 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 DEFB123Q8N688 67 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 OR5AP2Q8NGF4 316 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 OR51F2Q8NH61 342 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 PIGTQ969N2 578 aa11.22□□□□□ -0.61
LIG1-201ENST00000263274 ZNF629Q9UEG4 869 aaPredicted RBP11.22□□□□□ -0.61
LIG1-201ENST00000263274 TMEM218A2RU14 115 aa11.21□□□□□ -0.61
LIG1-201ENST00000263274 MSGN1A6NI15 193 aa11.21□□□□□ -0.61
LIG1-201ENST00000263274 NUDT21O43809 227 aaKnown RBP11.21□□□□□ -0.61
LIG1-201ENST00000263274 NPIPB7O75200 414 aa11.21□□□□□ -0.61
LIG1-201ENST00000263274 EIF3GO75821 320 aaKnown RBP eCLIP11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms