RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 GLRX5Q86SX6 157 aa12.13□□□□□ -0.47
LDLR-201ENST00000252444 TMEM251Q8N6I4 163 aa12.13□□□□□ -0.47
LDLR-201ENST00000252444 S1PR3Q99500 378 aa12.13□□□□□ -0.47
LDLR-201ENST00000252444 OR2H1Q9GZK4 316 aa12.13□□□□□ -0.47
LDLR-201ENST00000252444 PAHP00439 452 aa12.13□□□□□ -0.47
LDLR-201ENST00000252444 LUMP51884 338 aaPredicted RBP12.13□□□□□ -0.47
LDLR-201ENST00000252444 RPS27AP62979 156 aaKnown RBP12.13□□□□□ -0.47
LDLR-201ENST00000252444 UBA52P62987 128 aaKnown RBP12.13□□□□□ -0.47
LDLR-201ENST00000252444 DUSP2Q05923 314 aa12.13□□□□□ -0.47
LDLR-201ENST00000252444 IQCF2Q8IXL9 164 aa12.13□□□□□ -0.47
LDLR-201ENST00000252444 DTX3Q8N9I9 347 aa12.13□□□□□ -0.47
LDLR-201ENST00000252444 IMMP1LQ96LU5 166 aa12.13□□□□□ -0.47
LDLR-201ENST00000252444 CYTIPO60759 359 aa12.12□□□□□ -0.47
LDLR-201ENST00000252444 IGKV1D-16P01601 117 aa12.12□□□□□ -0.47
LDLR-201ENST00000252444 ID4P47928 161 aa12.12□□□□□ -0.47
LDLR-201ENST00000252444 MMP15P51511 669 aa12.12□□□□□ -0.47
LDLR-201ENST00000252444 FXYD4P59646 89 aa12.12□□□□□ -0.47
LDLR-201ENST00000252444 RTL8BQ17RB0 113 aa12.12□□□□□ -0.47
LDLR-201ENST00000252444 PDCD1LG2Q9BQ51 273 aa12.12□□□□□ -0.47
LDLR-201ENST00000252444 OR2W5A6NFC9 320 aa12.12□□□□□ -0.47
LDLR-201ENST00000252444 FFAR1O14842 300 aa12.12□□□□□ -0.47
LDLR-201ENST00000252444 CSF3P09919 207 aa12.12□□□□□ -0.47
LDLR-201ENST00000252444 FUT3P21217 361 aa12.12□□□□□ -0.47
LDLR-201ENST00000252444 HBG1P69891 147 aa12.12□□□□□ -0.47
LDLR-201ENST00000252444 HBG2P69892 147 aa12.12□□□□□ -0.47
LDLR-201ENST00000252444 AADACL3Q5VUY0 350 aa12.12□□□□□ -0.47
LDLR-201ENST00000252444 DMKNQ6E0U4 476 aaPredicted RBP12.12□□□□□ -0.47
LDLR-201ENST00000252444 CATSPERDQ86XM0 798 aa12.12□□□□□ -0.47
LDLR-201ENST00000252444 LILRB2Q8N423 598 aa12.12□□□□□ -0.47
LDLR-201ENST00000252444 TP53TG5Q9Y2B4 290 aa12.12□□□□□ -0.47
LDLR-201ENST00000252444 IGFBP1P08833 259 aaPredicted RBP12.12□□□□□ -0.47
LDLR-201ENST00000252444 RPS19P39019 145 aaKnown RBP12.12□□□□□ -0.47
LDLR-201ENST00000252444 CD276Q5ZPR3 534 aa12.12□□□□□ -0.47
LDLR-201ENST00000252444 IDO2Q6ZQW0 420 aa12.12□□□□□ -0.47
LDLR-201ENST00000252444 MOGAT1Q96PD6 335 aa12.12□□□□□ -0.47
LDLR-201ENST00000252444 NDUFB3O43676 98 aa12.12□□□□□ -0.47
LDLR-201ENST00000252444 IFNA2P01563 188 aa12.12□□□□□ -0.47
LDLR-201ENST00000252444 BCDIN3DQ7Z5W3 292 aaKnown RBP12.12□□□□□ -0.47
LDLR-201ENST00000252444 ZPLD1Q8TCW7 415 aa12.12□□□□□ -0.47
LDLR-201ENST00000252444 PRSS27Q9BQR3 290 aa12.12□□□□□ -0.47
LDLR-201ENST00000252444 CTDSPLO15194 276 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 EPXP11678 715 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 CLDN6P56747 220 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 UTS2BQ765I0 119 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 RAB1CQ92928 201 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 MS4A5Q9H3V2 200 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 TRGV10A0A0A0MS01 117 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 NPIPB9F8W1W9 429 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 FABP5Q01469 135 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 MADCAM1Q13477 382 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 IRF3Q14653 427 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 FADS6Q8N9I5 356 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 GAL3ST2Q9H3Q3 398 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 FBXL2Q9UKC9 423 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 SNRPGP15A8MWD9 76 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 GRPP07492 148 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 EVX1P49640 407 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 SLC38A6Q8IZM9 456 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 PLPP7Q8NBV4 271 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 SEH1LQ96EE3 360 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 MED30Q96HR3 178 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 TSNAXQ99598 290 aaKnown RBP12.11□□□□□ -0.47
LDLR-201ENST00000252444 ZNF416Q9BWM5 594 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 SLCO1B1Q9Y6L6 691 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 A0A096LPE4 126 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 A0A1W2PPZ6 126 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 FAM90A10PA6NDY2 464 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 FAM90A18PA6NE21 464 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 FAM90A16PA6NEW6 464 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 FAM90A20PA6NIJ5 464 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 FAM90A8PA6NJQ4 464 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 FAM90A7PA6NKC0 464 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 FAM90A22PA8MWA6 464 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 FAM90A12PA8MX19 464 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 FAM90A5PA8MXJ8 464 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 FAM90A23PA8MXZ1 464 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 F5H0A9 414 aaPredicted RBP12.11□□□□□ -0.47
LDLR-201ENST00000252444 TFP02787 698 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 FAM90A15PP0C7V4 464 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 FAM90A13PP0C7W8 464 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 FAM90A14PP0C7W9 464 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 FAM90A24PP0C7X0 464 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 FSTP19883 344 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 RAG2P55895 527 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 C10orf128Q5T292 105 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 TMPRSS7Q7RTY8 843 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 SPAG16Q8N0X2 631 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 WDSUB1Q8N9V3 476 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 OR5M9Q8NGP3 310 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 CD300LFQ8TDQ1 290 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 DLL4Q9NR61 685 aa12.11□□□□□ -0.47
LDLR-201ENST00000252444 PTAFRP25105 342 aa12.1□□□□□ -0.47
LDLR-201ENST00000252444 GABRA4P48169 554 aa12.1□□□□□ -0.47
LDLR-201ENST00000252444 WDR38Q5JTN6 314 aa12.1□□□□□ -0.47
LDLR-201ENST00000252444 ZNF441Q8N8Z8 693 aa12.1□□□□□ -0.47
LDLR-201ENST00000252444 CORO2AQ92828 525 aa12.1□□□□□ -0.47
LDLR-201ENST00000252444 ZG16BQ96DA0 208 aa12.1□□□□□ -0.47
LDLR-201ENST00000252444 HIPK2Q9H2X6 1198 aa12.1□□□□□ -0.47
LDLR-201ENST00000252444 PLXNA4Q9HCM2 1894 aa12.1□□□□□ -0.47
LDLR-201ENST00000252444 TPT1P13693 172 aaKnown RBP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms