RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 DHRS12A0PJE2 317 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 NPEPPSL1A6NEC2 478 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 C9orf172C9J069 976 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 P01737 135 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 SLC35G6P0C7Q6 338 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 BTG1P62324 171 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 APOFQ13790 326 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 PCK2Q16822 640 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 DND1Q8IYX4 353 aaKnown RBP3.21□□□□□ -1.9
SCN1A-221ENST00000641996 SLC38A9Q8NBW4 561 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 B3GNT7Q8NFL0 401 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 BAALCQ8WXS3 180 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 KLK6Q92876 244 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 MMP25Q9NPA2 562 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 DLL4Q9NR61 685 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 SLC2A4RGQ9NR83 387 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 ZNF214Q9UL59 606 aaPredicted RBP3.21□□□□□ -1.9
SCN1A-221ENST00000641996 DOCK2Q92608 1830 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 A0A1B0GUS0 222 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 C1QTNF9BB2RNN3 333 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 GOT2P00505 430 aaKnown RBP3.21□□□□□ -1.9
SCN1A-221ENST00000641996 ITGB7P26010 798 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 CDKN2AP42771 156 aaKnown RBP3.21□□□□□ -1.9
SCN1A-221ENST00000641996 OPN5Q6U736 354 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 TMEM64Q6YI46 380 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 OR8S1Q8NH09 359 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 RNF183Q96D59 192 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 SPATA31E1Q6ZUB1 1445 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 THBDP07204 575 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 EMP2P54851 167 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 ZNF154Q13106 437 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 LAMTOR1Q6IAA8 161 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 GKN2Q86XP6 184 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 CERS5Q8N5B7 392 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 TMEM217Q8N7C4 229 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 OR4K17Q8NGC6 315 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 LINC00477Q96M19 166 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 MRPL57Q9BQC6 102 aaKnown RBP3.21□□□□□ -1.9
SCN1A-221ENST00000641996 ABHD14AQ9BUJ0 271 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 C11orf54Q9H0W9 315 aaPredicted RBP3.21□□□□□ -1.9
SCN1A-221ENST00000641996 CD320Q9NPF0 282 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 ZNF256Q9Y2P7 627 aaPredicted RBP3.21□□□□□ -1.9
SCN1A-221ENST00000641996 LAMTOR2Q9Y2Q5 125 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 ABCA10Q8WWZ4 1543 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 PLA2R1Q13018 1463 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 RPRD2Q5VT52 1461 aaKnown RBP3.21□□□□□ -1.9
SCN1A-221ENST00000641996 MEIS3P1A6NDR6 274 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 DDTLA6NHG4 134 aaPredicted RBP3.21□□□□□ -1.9
SCN1A-221ENST00000641996 OR11H12B2RN74 326 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 ACTL6AO96019 429 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 ADAM8P78325 824 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 PCLAFQ15004 111 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 ADAMTSL5Q6ZMM2 481 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 RAB42Q8N4Z0 105 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 HJURPQ8NCD3 748 aaPredicted RBP3.21□□□□□ -1.9
SCN1A-221ENST00000641996 OR11H1Q8NG94 326 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 OR11H2Q8NH07 326 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 GALMQ96C23 342 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 NTNG2Q96CW9 530 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 PCED1BQ96HM7 432 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 LOXL4Q96JB6 756 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 PTPRFP10586 1907 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 ANOS1P23352 680 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 KLRC2P26717 231 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 IMPA1P29218 277 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 PIGAP37287 484 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 ART1P52961 327 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 ERVFC1-1P60608 527 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 PAX2Q02962 417 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 ZNF687Q8N1G0 1237 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 LRRC52Q8N7C0 313 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 OR4S2Q8NH73 311 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 FAM110DQ8TAY7 271 aaPredicted RBP3.21□□□□□ -1.9
SCN1A-221ENST00000641996 TWSG1Q9GZX9 223 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 AIG1Q9NVV5 245 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 PSORS1C1Q9UIG5 152 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 PPP5D1E7EU14 171 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 J3QLI3 93 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 STK17BO94768 372 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 ALG10Q5BKT4 473 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 PRSS57Q6UWY2 283 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 VGLL2Q8N8G2 317 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 C10orf82Q8WW14 230 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 BORCS7Q96B45 105 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 H2AFJQ9BTM1 129 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 RSG1Q9BU20 258 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 LINC00470Q9BZP3 86 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 SLC25A31Q9H0C2 315 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 SLC25A37Q9NYZ2 338 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 UQCR10Q9UDW1 63 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 ZNF629Q9UEG4 869 aaPredicted RBP3.21□□□□□ -1.9
SCN1A-221ENST00000641996 NUP210LQ5VU65 1888 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 KBTBD11-OT1A0A1B0GTJ5 212 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 MEGF11A6BM72 1044 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 GAGE12JA6NER3 117 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 GABRPO00591 440 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 GAGE7O76087 117 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 HLA-DQB2P05538 268 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 GAGE12FP0CL80 117 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 GAGE12GP0CL81 117 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms