RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-223	ENST00000629179	OAZ3	Q9UMX2	235 aa		11.96	□□□□□ -0.49
PNKP-223	ENST00000629179	PCDHB10	Q9UN67	800 aa		11.96	□□□□□ -0.49
PNKP-223	ENST00000629179	EBAG9	O00559	213 aa		11.95	□□□□□ -0.5
PNKP-223	ENST00000629179	APOC1	P02654	83 aa		11.95	□□□□□ -0.5
PNKP-223	ENST00000629179	MRPL3	P09001	348 aa	Known RBP	11.95	□□□□□ -0.5
PNKP-223	ENST00000629179	ALOX5AP	P20292	161 aa		11.95	□□□□□ -0.5
PNKP-223	ENST00000629179	POLR2I	P36954	125 aa	Known RBP	11.95	□□□□□ -0.5
PNKP-223	ENST00000629179	BTG1	P62324	171 aa		11.95	□□□□□ -0.5
PNKP-223	ENST00000629179	EFNB1	P98172	346 aa		11.95	□□□□□ -0.5
PNKP-223	ENST00000629179	TIGD6	Q17RP2	521 aa		11.95	□□□□□ -0.5
PNKP-223	ENST00000629179	PRAMEF6	Q5VXH4	476 aa		11.95	□□□□□ -0.5
PNKP-223	ENST00000629179	C12orf73	Q69YU5	71 aa		11.95	□□□□□ -0.5
PNKP-223	ENST00000629179	LRRN1	Q6UXK5	716 aa		11.95	□□□□□ -0.5
PNKP-223	ENST00000629179	SLC16A9	Q7RTY1	509 aa		11.95	□□□□□ -0.5
PNKP-223	ENST00000629179	SPSB4	Q96A44	273 aa		11.95	□□□□□ -0.5
PNKP-223	ENST00000629179	PKP2	Q99959	881 aa		11.95	□□□□□ -0.5
PNKP-223	ENST00000629179	YIPF3	Q9GZM5	350 aa		11.95	□□□□□ -0.5
PNKP-223	ENST00000629179	UFSP2	Q9NUQ7	469 aa		11.95	□□□□□ -0.5
PNKP-223	ENST00000629179	TRAV20	A0A0B4J274	112 aa		11.94	□□□□□ -0.5
PNKP-223	ENST00000629179		H3BNX3	289 aa		11.94	□□□□□ -0.5
PNKP-223	ENST00000629179	IFNL4	K9M1U5	179 aa		11.94	□□□□□ -0.5
PNKP-223	ENST00000629179	PCMT1	P22061	227 aa		11.94	□□□□□ -0.5
PNKP-223	ENST00000629179	SRP14	P37108	136 aa	Known RBP	11.94	□□□□□ -0.5
PNKP-223	ENST00000629179	CD200	P41217	278 aa		11.94	□□□□□ -0.5
PNKP-223	ENST00000629179	RAD23A	P54725	363 aa		11.94	□□□□□ -0.5
PNKP-223	ENST00000629179	LCN2	P80188	198 aa		11.94	□□□□□ -0.5
PNKP-223	ENST00000629179	FAM3A	P98173	230 aa		11.94	□□□□□ -0.5
PNKP-223	ENST00000629179	MPPED2	Q15777	294 aa		11.94	□□□□□ -0.5
PNKP-223	ENST00000629179	GFOD2	Q3B7J2	385 aa		11.94	□□□□□ -0.5
PNKP-223	ENST00000629179	TMEM155	Q4W5P6	130 aa		11.94	□□□□□ -0.5
PNKP-223	ENST00000629179	FAM201A	Q5SY85	155 aa		11.94	□□□□□ -0.5
PNKP-223	ENST00000629179	LCN1P1	Q5VSP4	162 aa		11.94	□□□□□ -0.5
PNKP-223	ENST00000629179	FAHD2B	Q6P2I3	314 aa	Predicted RBP	11.94	□□□□□ -0.5
PNKP-223	ENST00000629179	MEPCE	Q7L2J0	689 aa	Known RBP	11.94	□□□□□ -0.5
PNKP-223	ENST00000629179	KRT77	Q7Z794	578 aa		11.94	□□□□□ -0.5
PNKP-223	ENST00000629179	TMEM163	Q8TC26	289 aa		11.94	□□□□□ -0.5
PNKP-223	ENST00000629179	FAHD2A	Q96GK7	314 aa		11.94	□□□□□ -0.5
PNKP-223	ENST00000629179	REEP6	Q96HR9	211 aa		11.94	□□□□□ -0.5
PNKP-223	ENST00000629179	PGAM5	Q96HS1	289 aa		11.94	□□□□□ -0.5
PNKP-223	ENST00000629179	IL4I1	Q96RQ9	567 aa		11.94	□□□□□ -0.5
PNKP-223	ENST00000629179	ADAT1	Q9BUB4	502 aa	Known RBP	11.94	□□□□□ -0.5
PNKP-223	ENST00000629179	OSBPL10	Q9BXB5	764 aa		11.94	□□□□□ -0.5
PNKP-223	ENST00000629179	PRRG3	Q9BZD7	231 aa		11.94	□□□□□ -0.5
PNKP-223	ENST00000629179	SLC22A4	Q9H015	551 aa		11.94	□□□□□ -0.5
PNKP-223	ENST00000629179	OPA3	Q9H6K4	179 aa		11.94	□□□□□ -0.5
PNKP-223	ENST00000629179	SP140L	Q9H930	580 aa		11.94	□□□□□ -0.5
PNKP-223	ENST00000629179	PATZ1	Q9HBE1	687 aa	Known RBP	11.94	□□□□□ -0.5
PNKP-223	ENST00000629179	G6PC2	Q9NQR9	355 aa		11.94	□□□□□ -0.5
PNKP-223	ENST00000629179	MRPL15	Q9P015	296 aa	Known RBP	11.94	□□□□□ -0.5
PNKP-223	ENST00000629179	H2AFY2	Q9P0M6	372 aa	Predicted RBP	11.94	□□□□□ -0.5
PNKP-223	ENST00000629179	LAMP5	Q9UJQ1	280 aa		11.94	□□□□□ -0.5
PNKP-223	ENST00000629179	FBN1	P35555	2871 aa	Known RBP	11.93	□□□□□ -0.5
PNKP-223	ENST00000629179	PSMD9	O00233	223 aa		11.93	□□□□□ -0.5
PNKP-223	ENST00000629179	GMDS	O60547	372 aa		11.93	□□□□□ -0.5
PNKP-223	ENST00000629179	ZFP36	P26651	326 aa	Known RBP	11.93	□□□□□ -0.5
PNKP-223	ENST00000629179	MDH2	P40926	338 aa	Known RBP	11.93	□□□□□ -0.5
PNKP-223	ENST00000629179	GATA4	P43694	442 aa		11.93	□□□□□ -0.5
PNKP-223	ENST00000629179	ZNF181	Q2M3W8	571 aa		11.93	□□□□□ -0.5
PNKP-223	ENST00000629179	AADACL4	Q5VUY2	407 aa		11.93	□□□□□ -0.5
PNKP-223	ENST00000629179	KLHL36	Q8N4N3	616 aa		11.93	□□□□□ -0.5
PNKP-223	ENST00000629179	SPIC	Q8N5J4	248 aa		11.93	□□□□□ -0.5
PNKP-223	ENST00000629179	CELF2-AS1	Q8N7Q2	184 aa		11.93	□□□□□ -0.5
PNKP-223	ENST00000629179	OR52H1	Q8NGJ2	320 aa		11.93	□□□□□ -0.5
PNKP-223	ENST00000629179	TTTY10	Q9BZA0	68 aa		11.93	□□□□□ -0.5
PNKP-223	ENST00000629179	OR10A2	Q9H208	303 aa		11.93	□□□□□ -0.5
PNKP-223	ENST00000629179	RIBC2	Q9H4K1	309 aa		11.93	□□□□□ -0.5
PNKP-223	ENST00000629179	TMEM165	Q9HC07	324 aa		11.93	□□□□□ -0.5
PNKP-223	ENST00000629179	ENOPH1	Q9UHY7	261 aa		11.93	□□□□□ -0.5
PNKP-223	ENST00000629179	COPS3	Q9UNS2	423 aa		11.93	□□□□□ -0.5
PNKP-223	ENST00000629179	LRP12	Q9Y561	859 aa		11.93	□□□□□ -0.5
PNKP-223	ENST00000629179	hCG_38984	A0A1B0GV85	526 aa		11.92	□□□□□ -0.5
PNKP-223	ENST00000629179	LRRC30	A6NM36	301 aa		11.92	□□□□□ -0.5
PNKP-223	ENST00000629179	ANKRD30BL	A7E2S9	258 aa		11.92	□□□□□ -0.5
PNKP-223	ENST00000629179	PRR32	B1ATL7	298 aa		11.92	□□□□□ -0.5
PNKP-223	ENST00000629179	FAM20B	O75063	409 aa		11.92	□□□□□ -0.5
PNKP-223	ENST00000629179	AVP	P01185	164 aa		11.92	□□□□□ -0.5
PNKP-223	ENST00000629179	DDOST	P39656	456 aa		11.92	□□□□□ -0.5
PNKP-223	ENST00000629179	GSK3A	P49840	483 aa		11.92	□□□□□ -0.5
PNKP-223	ENST00000629179	SEC61A1	P61619	476 aa	Known RBP	11.92	□□□□□ -0.5
PNKP-223	ENST00000629179	HOXA4	Q00056	320 aa	Predicted RBP	11.92	□□□□□ -0.5
PNKP-223	ENST00000629179	NXNL2	Q5VZ03	156 aa		11.92	□□□□□ -0.5
PNKP-223	ENST00000629179	C19orf18	Q8NEA5	215 aa		11.92	□□□□□ -0.5
PNKP-223	ENST00000629179		Q8TCH9	128 aa		11.92	□□□□□ -0.5
PNKP-223	ENST00000629179	RBM4B	Q9BQ04	359 aa	Known RBP	11.92	□□□□□ -0.5
PNKP-223	ENST00000629179	GABARAPL3	Q9BY60	117 aa		11.92	□□□□□ -0.5
PNKP-223	ENST00000629179	PPP1R3E	Q9H7J1	279 aa		11.92	□□□□□ -0.5
PNKP-223	ENST00000629179	NOP16	Q9Y3C1	178 aa	Known RBP	11.92	□□□□□ -0.5
PNKP-223	ENST00000629179	SVEP1	Q4LDE5	3571 aa		11.92	□□□□□ -0.5
PNKP-223	ENST00000629179	PPIAL4E	A0A075B759	164 aa		11.91	□□□□□ -0.5
PNKP-223	ENST00000629179	CEACAM18	A8MTB9	384 aa		11.91	□□□□□ -0.5
PNKP-223	ENST00000629179	PPIAL4D	F5H284	164 aa		11.91	□□□□□ -0.5
PNKP-223	ENST00000629179	PNP	P00491	289 aa		11.91	□□□□□ -0.5
PNKP-223	ENST00000629179	GRP	P07492	148 aa		11.91	□□□□□ -0.5
PNKP-223	ENST00000629179	PPIAL4F	P0DN26	164 aa		11.91	□□□□□ -0.5
PNKP-223	ENST00000629179	IRF2	P14316	349 aa		11.91	□□□□□ -0.5
PNKP-223	ENST00000629179	CFL1	P23528	166 aa	Known RBP	11.91	□□□□□ -0.5
PNKP-223	ENST00000629179	PSMA6	P60900	246 aa	Known RBP	11.91	□□□□□ -0.5
PNKP-223	ENST00000629179	DCAF12L2	Q5VW00	463 aa		11.91	□□□□□ -0.5
PNKP-223	ENST00000629179	ZFP1	Q6P2D0	407 aa		11.91	□□□□□ -0.5
PNKP-223	ENST00000629179	KCTD18	Q6PI47	426 aa	Predicted RBP	11.91	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 104.5 ms