RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 SMN1Q16637 294 aaKnown RBP15.41■□□□□ 0.06
CLN3-239ENST00000628023 IZUMO2Q6UXV1 221 aa15.41■□□□□ 0.06
CLN3-239ENST00000628023 COMMD2Q86X83 199 aa15.41■□□□□ 0.06
CLN3-239ENST00000628023 PRIMA1Q86XR5 153 aa15.41■□□□□ 0.06
CLN3-239ENST00000628023 MRPL48Q96GC5 212 aaKnown RBP15.41■□□□□ 0.06
CLN3-239ENST00000628023 REG4Q9BYZ8 158 aa15.41■□□□□ 0.06
CLN3-239ENST00000628023 MYOZ1Q9NP98 299 aaPredicted RBP15.41■□□□□ 0.06
CLN3-239ENST00000628023 ZDHHC8Q9ULC8 765 aa15.41■□□□□ 0.06
CLN3-239ENST00000628023 METTL15A6NJ78 407 aa15.4■□□□□ 0.06
CLN3-239ENST00000628023 IQCF6A8MYZ5 107 aa15.4■□□□□ 0.06
CLN3-239ENST00000628023 RNF223E7ERA6 249 aa15.4■□□□□ 0.06
CLN3-239ENST00000628023 LOC110117498-PIK3R3F6TDL0 507 aa15.4■□□□□ 0.06
CLN3-239ENST00000628023 WBP4O75554 376 aaKnown RBP15.4■□□□□ 0.06
CLN3-239ENST00000628023 IGHV1-46P01743 117 aa15.4■□□□□ 0.06
CLN3-239ENST00000628023 TNFSF4P23510 183 aa15.4■□□□□ 0.06
CLN3-239ENST00000628023 DCTDP32321 178 aa15.4■□□□□ 0.06
CLN3-239ENST00000628023 PDLIM4P50479 330 aa15.4■□□□□ 0.06
CLN3-239ENST00000628023 DSCR9P59020 149 aa15.4■□□□□ 0.06
CLN3-239ENST00000628023 ISL1P61371 349 aa15.4■□□□□ 0.06
CLN3-239ENST00000628023 CCL8P80075 99 aa15.4■□□□□ 0.06
CLN3-239ENST00000628023 RAB40BQ12829 278 aa15.4■□□□□ 0.06
CLN3-239ENST00000628023 KLHL22Q53GT1 634 aa15.4■□□□□ 0.06
CLN3-239ENST00000628023 BCL2L15Q5TBC7 163 aa15.4■□□□□ 0.06
CLN3-239ENST00000628023 PLEKHG7Q6ZR37 379 aa15.4■□□□□ 0.06
CLN3-239ENST00000628023 PRSS45Q7RTY3 260 aa15.4■□□□□ 0.06
CLN3-239ENST00000628023 ACBD7Q8N6N7 88 aa15.4■□□□□ 0.06
CLN3-239ENST00000628023 OR8G5Q8NG78 346 aa15.4■□□□□ 0.06
CLN3-239ENST00000628023 OR2Z1Q8NG97 314 aa15.4■□□□□ 0.06
CLN3-239ENST00000628023 OR8B12Q8NGG6 310 aa15.4■□□□□ 0.06
CLN3-239ENST00000628023 FAM168AQ92567 244 aa15.4■□□□□ 0.06
CLN3-239ENST00000628023 TFAP2CQ92754 450 aa15.4■□□□□ 0.06
CLN3-239ENST00000628023 DIRC2Q96SL1 478 aa15.4■□□□□ 0.06
CLN3-239ENST00000628023 MYCBPQ99417 103 aaPredicted RBP15.4■□□□□ 0.06
CLN3-239ENST00000628023 EGLN1Q9GZT9 426 aa15.4■□□□□ 0.06
CLN3-239ENST00000628023 RGCCQ9H4X1 137 aa15.4■□□□□ 0.06
CLN3-239ENST00000628023 MOB1AQ9H8S9 216 aa15.4■□□□□ 0.06
CLN3-239ENST00000628023 SAP30LQ9HAJ7 183 aa15.4■□□□□ 0.06
CLN3-239ENST00000628023 FAM206AQ9NX38 181 aa15.4■□□□□ 0.06
CLN3-239ENST00000628023 MRM2Q9UI43 246 aaKnown RBP15.4■□□□□ 0.06
CLN3-239ENST00000628023 GNG8Q9UK08 70 aa15.4■□□□□ 0.06
CLN3-239ENST00000628023 EXOGQ9Y2C4 368 aaKnown RBP15.4■□□□□ 0.06
CLN3-239ENST00000628023 R4GMQ9 66 aa15.4■□□□□ 0.06
CLN3-239ENST00000628023 IRGMA1A4Y4 181 aa15.39■□□□□ 0.05
CLN3-239ENST00000628023 CD300LBA8K4G0 201 aa15.39■□□□□ 0.05
CLN3-239ENST00000628023 HSPA13P48723 471 aa15.39■□□□□ 0.05
CLN3-239ENST00000628023 ZNF85Q03923 595 aa15.39■□□□□ 0.05
CLN3-239ENST00000628023 MFGE8Q08431 387 aaPredicted RBP15.39■□□□□ 0.05
CLN3-239ENST00000628023 TP53I3Q53FA7 332 aa15.39■□□□□ 0.05
CLN3-239ENST00000628023 FAM209AQ5JX71 171 aa15.39■□□□□ 0.05
CLN3-239ENST00000628023 THAP5Q7Z6K1 395 aa15.39■□□□□ 0.05
CLN3-239ENST00000628023 OR13G1Q8NGZ3 307 aa15.39■□□□□ 0.05
CLN3-239ENST00000628023 UBASH3BQ8TF42 649 aa15.39■□□□□ 0.05
CLN3-239ENST00000628023 SGK3Q96BR1 496 aa15.39■□□□□ 0.05
CLN3-239ENST00000628023 ELMOD3Q96FG2 381 aa15.39■□□□□ 0.05
CLN3-239ENST00000628023 RHNO1Q9BSD3 238 aa15.39■□□□□ 0.05
CLN3-239ENST00000628023 REPIN1Q9BWE0 567 aaKnown RBP15.39■□□□□ 0.05
CLN3-239ENST00000628023 PBOV1Q9GZY1 135 aa15.39■□□□□ 0.05
CLN3-239ENST00000628023 ACOD1A6NK06 481 aa15.38■□□□□ 0.05
CLN3-239ENST00000628023 KIAA1324LA8MWY0 1029 aaPredicted RBP15.38■□□□□ 0.05
CLN3-239ENST00000628023 SULT1C4O75897 302 aa15.38■□□□□ 0.05
CLN3-239ENST00000628023 NCR1O76036 304 aa15.38■□□□□ 0.05
CLN3-239ENST00000628023 HPXP02790 462 aa15.38■□□□□ 0.05
CLN3-239ENST00000628023 VHLP40337 213 aa15.38■□□□□ 0.05
CLN3-239ENST00000628023 ACTA2P62736 377 aa15.38■□□□□ 0.05
CLN3-239ENST00000628023 ACTG2P63267 376 aa15.38■□□□□ 0.05
CLN3-239ENST00000628023 TNFAIP6P98066 277 aaPredicted RBP15.38■□□□□ 0.05
CLN3-239ENST00000628023 LIPNQ5VXI9 398 aa15.38■□□□□ 0.05
CLN3-239ENST00000628023 OR10AD1Q8NGE0 317 aa15.38■□□□□ 0.05
CLN3-239ENST00000628023 OR56B2PQ8NGI1 322 aa15.38■□□□□ 0.05
CLN3-239ENST00000628023 OR52I1Q8NGK6 324 aa15.38■□□□□ 0.05
CLN3-239ENST00000628023 SPSB4Q96A44 273 aa15.38■□□□□ 0.05
CLN3-239ENST00000628023 PIMREGQ9BSJ6 248 aa15.38■□□□□ 0.05
CLN3-239ENST00000628023 INPP5EQ9NRR6 644 aa15.38■□□□□ 0.05
CLN3-239ENST00000628023 TMEM100Q9NV29 134 aa15.38■□□□□ 0.05
CLN3-239ENST00000628023 NKIRAS2Q9NYR9 191 aa15.38■□□□□ 0.05
CLN3-239ENST00000628023 ZNF319Q9P2F9 582 aa15.38■□□□□ 0.05
CLN3-239ENST00000628023 ZNF391Q9UJN7 358 aa15.38■□□□□ 0.05
CLN3-239ENST00000628023 SNX5Q9Y5X3 404 aa15.38■□□□□ 0.05
CLN3-239ENST00000628023 J3QRE1 110 aa15.37■□□□□ 0.05
CLN3-239ENST00000628023 LILRA1O75019 489 aa15.37■□□□□ 0.05
CLN3-239ENST00000628023 CRLF1O75462 422 aa15.37■□□□□ 0.05
CLN3-239ENST00000628023 TACSTD2P09758 323 aa15.37■□□□□ 0.05
CLN3-239ENST00000628023 MMP16P51512 607 aa15.37■□□□□ 0.05
CLN3-239ENST00000628023 CDK5R2Q13319 367 aa15.37■□□□□ 0.05
CLN3-239ENST00000628023 Q6ZR03 302 aa15.37■□□□□ 0.05
CLN3-239ENST00000628023 RDH5Q92781 318 aa15.37■□□□□ 0.05
CLN3-239ENST00000628023 SLC30A2Q9BRI3 323 aa15.37■□□□□ 0.05
CLN3-239ENST00000628023 ALG8Q9BVK2 526 aa15.37■□□□□ 0.05
CLN3-239ENST00000628023 ACOXLQ9NUZ1 547 aa15.37■□□□□ 0.05
CLN3-239ENST00000628023 NUFIP1Q9UHK0 495 aaKnown RBP15.37■□□□□ 0.05
CLN3-239ENST00000628023 MYRFQ9Y2G1 1151 aa15.37■□□□□ 0.05
CLN3-239ENST00000628023 NOP16Q9Y3C1 178 aaKnown RBP15.37■□□□□ 0.05
CLN3-239ENST00000628023 IGHV4-30-2A0A087WSY4 118 aa15.36■□□□□ 0.05
CLN3-239ENST00000628023 hCG_38984A0A1B0GV85 526 aa15.36■□□□□ 0.05
CLN3-239ENST00000628023 LOC390937A0A1W2PQ73 354 aa15.36■□□□□ 0.05
CLN3-239ENST00000628023 ANKRD30BLA7E2S9 258 aa15.36■□□□□ 0.05
CLN3-239ENST00000628023 LYNX1G3V0Z9 82 aa15.36■□□□□ 0.05
CLN3-239ENST00000628023 J3QLW9 94 aa15.36■□□□□ 0.05
CLN3-239ENST00000628023 CDC14BO60729 498 aa15.36■□□□□ 0.05
CLN3-239ENST00000628023 FAM20BO75063 409 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 108.3 ms