RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 GP2P55259 537 aaKnown RBP12.33□□□□□ -0.44
UPF1-211ENST00000600868 FAM3AP98173 230 aa12.33□□□□□ -0.44
UPF1-211ENST00000600868 SLC3A1Q07837 685 aa12.33□□□□□ -0.44
UPF1-211ENST00000600868 HLXQ14774 488 aaPredicted RBP12.33□□□□□ -0.44
UPF1-211ENST00000600868 TSTQ16762 297 aaKnown RBP12.33□□□□□ -0.44
UPF1-211ENST00000600868 ZNF672Q499Z4 452 aaPredicted RBP12.33□□□□□ -0.44
UPF1-211ENST00000600868 SPATA46Q5T0L3 261 aa12.33□□□□□ -0.44
UPF1-211ENST00000600868 LIPKQ5VXJ0 399 aa12.33□□□□□ -0.44
UPF1-211ENST00000600868 PGAP1Q75T13 922 aa12.33□□□□□ -0.44
UPF1-211ENST00000600868 DOK3Q7L591 496 aa12.33□□□□□ -0.44
UPF1-211ENST00000600868 MRPL21Q7Z2W9 205 aaKnown RBP12.33□□□□□ -0.44
UPF1-211ENST00000600868 PHC2Q8IXK0 858 aa12.33□□□□□ -0.44
UPF1-211ENST00000600868 RDH10Q8IZV5 341 aa12.33□□□□□ -0.44
UPF1-211ENST00000600868 OR2AE1Q8NHA4 323 aa12.33□□□□□ -0.44
UPF1-211ENST00000600868 LILRB1Q8NHL6 650 aaPredicted RBP12.33□□□□□ -0.44
UPF1-211ENST00000600868 KLF14Q8TD94 323 aaPredicted RBP12.33□□□□□ -0.44
UPF1-211ENST00000600868 PLEKHB1Q9UF11 243 aaPredicted RBP12.33□□□□□ -0.44
UPF1-211ENST00000600868 UTP20O75691 2785 aaKnown RBP12.32□□□□□ -0.44
UPF1-211ENST00000600868 hCG_38984A0A1B0GV85 526 aa12.32□□□□□ -0.44
UPF1-211ENST00000600868 A0A1B0GVI7 797 aa12.32□□□□□ -0.44
UPF1-211ENST00000600868 LOC107986453A0A1B0GWG9 222 aa12.32□□□□□ -0.44
UPF1-211ENST00000600868 DHRS7CA6NNS2 312 aa12.32□□□□□ -0.44
UPF1-211ENST00000600868 CCRL2O00421 344 aa12.32□□□□□ -0.44
UPF1-211ENST00000600868 SYT7O43581 403 aa12.32□□□□□ -0.44
UPF1-211ENST00000600868 MTRF1O75570 445 aaKnown RBP12.32□□□□□ -0.44
UPF1-211ENST00000600868 TFAP2AP05549 437 aa12.32□□□□□ -0.44
UPF1-211ENST00000600868 ZNF12P17014 697 aa12.32□□□□□ -0.44
UPF1-211ENST00000600868 GCH1P30793 250 aa12.32□□□□□ -0.44
UPF1-211ENST00000600868 SSX1Q16384 188 aa12.32□□□□□ -0.44
UPF1-211ENST00000600868 MSMPQ1L6U9 139 aa12.32□□□□□ -0.44
UPF1-211ENST00000600868 ODF4Q2M2E3 257 aa12.32□□□□□ -0.44
UPF1-211ENST00000600868 GFOD2Q3B7J2 385 aa12.32□□□□□ -0.44
UPF1-211ENST00000600868 YIF1BQ5BJH7 314 aa12.32□□□□□ -0.44
UPF1-211ENST00000600868 VHLLQ6RSH7 139 aa12.32□□□□□ -0.44
UPF1-211ENST00000600868 MS4A15Q8N5U1 240 aa12.32□□□□□ -0.44
UPF1-211ENST00000600868 SYNPRQ8TBG9 265 aa12.32□□□□□ -0.44
UPF1-211ENST00000600868 NEUROG1Q92886 237 aa12.32□□□□□ -0.44
UPF1-211ENST00000600868 MRPL24Q96A35 216 aaKnown RBP12.32□□□□□ -0.44
UPF1-211ENST00000600868 HAVCR1Q96D42 359 aa12.32□□□□□ -0.44
UPF1-211ENST00000600868 CMBLQ96DG6 245 aa12.32□□□□□ -0.44
UPF1-211ENST00000600868 DHRS9Q9BPW9 319 aa12.32□□□□□ -0.44
UPF1-211ENST00000600868 CISD1Q9NZ45 108 aaKnown RBP12.32□□□□□ -0.44
UPF1-211ENST00000600868 HHLA2Q9UM44 414 aa12.32□□□□□ -0.44
UPF1-211ENST00000600868 CMAHPQ9Y471 501 aa12.32□□□□□ -0.44
UPF1-211ENST00000600868 FASNP49327 2511 aaKnown RBP12.32□□□□□ -0.44
UPF1-211ENST00000600868 IGLV3-9A0A075B6K5 115 aa12.31□□□□□ -0.44
UPF1-211ENST00000600868 CTAG2O75638 210 aa12.31□□□□□ -0.44
UPF1-211ENST00000600868 DHRS3O75911 302 aa12.31□□□□□ -0.44
UPF1-211ENST00000600868 SELEP16581 610 aa12.31□□□□□ -0.44
UPF1-211ENST00000600868 KITLGP21583 273 aa12.31□□□□□ -0.44
UPF1-211ENST00000600868 COL8A1P27658 744 aa12.31□□□□□ -0.44
UPF1-211ENST00000600868 APOBEC3AP31941 199 aaPredicted RBP12.31□□□□□ -0.44
UPF1-211ENST00000600868 LIPAP38571 399 aa12.31□□□□□ -0.44
UPF1-211ENST00000600868 MPV17P39210 176 aa12.31□□□□□ -0.44
UPF1-211ENST00000600868 DDOSTP39656 456 aa12.31□□□□□ -0.44
UPF1-211ENST00000600868 ALDH3B2P48448 385 aa12.31□□□□□ -0.44
UPF1-211ENST00000600868 GSK3AP49840 483 aa12.31□□□□□ -0.44
UPF1-211ENST00000600868 FABP6P51161 128 aa12.31□□□□□ -0.44
UPF1-211ENST00000600868 SELENOVP59797 346 aa12.31□□□□□ -0.44
UPF1-211ENST00000600868 PSG7Q13046 419 aa12.31□□□□□ -0.44
UPF1-211ENST00000600868 OR8B8Q15620 311 aa12.31□□□□□ -0.44
UPF1-211ENST00000600868 TRAM1Q15629 374 aa12.31□□□□□ -0.44
UPF1-211ENST00000600868 ADIPOQQ15848 244 aa12.31□□□□□ -0.44
UPF1-211ENST00000600868 COMMD2Q86X83 199 aa12.31□□□□□ -0.44
UPF1-211ENST00000600868 OR14K1Q8NGZ2 314 aa12.31□□□□□ -0.44
UPF1-211ENST00000600868 GPR148Q8TDV2 347 aa12.31□□□□□ -0.44
UPF1-211ENST00000600868 RGP1Q92546 391 aaPredicted RBP12.31□□□□□ -0.44
UPF1-211ENST00000600868 C14orf79Q96F83 325 aa12.31□□□□□ -0.44
UPF1-211ENST00000600868 FAM71F1Q96KD3 344 aaPredicted RBP12.31□□□□□ -0.44
UPF1-211ENST00000600868 SOX7Q9BT81 388 aa12.31□□□□□ -0.44
UPF1-211ENST00000600868 NDUFB11Q9NX14 153 aa12.31□□□□□ -0.44
UPF1-211ENST00000600868 SF3B6Q9Y3B4 125 aaKnown RBP12.31□□□□□ -0.44
UPF1-211ENST00000600868 V9GYS6 101 aa12.31□□□□□ -0.44
UPF1-211ENST00000600868 PKDREJQ9NTG1 2253 aa12.31□□□□□ -0.44
UPF1-211ENST00000600868 DOPEY2Q9Y3R5 2298 aa12.31□□□□□ -0.44
UPF1-211ENST00000600868 PLCE1Q9P212 2302 aa12.3□□□□□ -0.44
UPF1-211ENST00000600868 A0A1W2PPR1 153 aa12.3□□□□□ -0.44
UPF1-211ENST00000600868 GGT3PA6NGU5 568 aa12.3□□□□□ -0.44
UPF1-211ENST00000600868 CD300LBA8K4G0 201 aa12.3□□□□□ -0.44
UPF1-211ENST00000600868 HS3ST1O14792 307 aa12.3□□□□□ -0.44
UPF1-211ENST00000600868 IGHV3-13P01766 116 aa12.3□□□□□ -0.44
UPF1-211ENST00000600868 OR4A8P0C604 315 aa12.3□□□□□ -0.44
UPF1-211ENST00000600868 PSMA1P25786 263 aaKnown RBP12.3□□□□□ -0.44
UPF1-211ENST00000600868 GABRA5P31644 462 aa12.3□□□□□ -0.44
UPF1-211ENST00000600868 SERPINF1P36955 418 aa12.3□□□□□ -0.44
UPF1-211ENST00000600868 MAP2K3P46734 347 aa12.3□□□□□ -0.44
UPF1-211ENST00000600868 RPL5P46777 297 aaKnown RBP12.3□□□□□ -0.44
UPF1-211ENST00000600868 EVX1P49640 407 aa12.3□□□□□ -0.44
UPF1-211ENST00000600868 KLF3P57682 345 aaPredicted RBP12.3□□□□□ -0.44
UPF1-211ENST00000600868 RPS11P62280 158 aaKnown RBP eCLIP12.3□□□□□ -0.44
UPF1-211ENST00000600868 TLE4Q04727 773 aa12.3□□□□□ -0.44
UPF1-211ENST00000600868 TNK1Q13470 666 aa12.3□□□□□ -0.44
UPF1-211ENST00000600868 ZBTB37Q5TC79 503 aa12.3□□□□□ -0.44
UPF1-211ENST00000600868 ZNF295-AS1Q8N0V1 137 aa12.3□□□□□ -0.44
UPF1-211ENST00000600868 CSNK2A3Q8NEV1 391 aa12.3□□□□□ -0.44
UPF1-211ENST00000600868 OR51A4Q8NGJ6 313 aa12.3□□□□□ -0.44
UPF1-211ENST00000600868 OR10AC1Q8NH08 325 aa12.3□□□□□ -0.44
UPF1-211ENST00000600868 TMED9Q9BVK6 235 aa12.3□□□□□ -0.44
UPF1-211ENST00000600868 MRPL37Q9BZE1 423 aaKnown RBP12.3□□□□□ -0.44
UPF1-211ENST00000600868 PURGQ9UJV8 347 aaKnown RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms