RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 FAM71F1Q96KD3 344 aaPredicted RBP17.91■□□□□ 0.46
SHKBP1-225ENST00000600733 OR5B2Q96R09 309 aa17.91■□□□□ 0.46
SHKBP1-225ENST00000600733 PHF7Q9BWX1 381 aaPredicted RBP17.91■□□□□ 0.46
SHKBP1-225ENST00000600733 BANF2Q9H503 90 aa17.91■□□□□ 0.46
SHKBP1-225ENST00000600733 BARX1Q9HBU1 254 aaPredicted RBP17.91■□□□□ 0.46
SHKBP1-225ENST00000600733 GPR84Q9NQS5 396 aa17.91■□□□□ 0.46
SHKBP1-225ENST00000600733 SDHAF3Q9NRP4 125 aa17.91■□□□□ 0.46
SHKBP1-225ENST00000600733 WIF1Q9Y5W5 379 aa17.91■□□□□ 0.46
SHKBP1-225ENST00000600733 SOCS1O15524 211 aa17.9■□□□□ 0.46
SHKBP1-225ENST00000600733 TRAF3IP2O43734 574 aaPredicted RBP17.9■□□□□ 0.46
SHKBP1-225ENST00000600733 MPIG6BO95866 241 aa17.9■□□□□ 0.46
SHKBP1-225ENST00000600733 APOC3P02656 99 aa17.9■□□□□ 0.46
SHKBP1-225ENST00000600733 SMAD4Q13485 552 aaKnown RBP17.9■□□□□ 0.46
SHKBP1-225ENST00000600733 PLAC9Q5JTB6 97 aa17.9■□□□□ 0.46
SHKBP1-225ENST00000600733 ATRAIDQ6UW56 229 aa17.9■□□□□ 0.46
SHKBP1-225ENST00000600733 DTWD2Q8NBA8 298 aa17.9■□□□□ 0.46
SHKBP1-225ENST00000600733 OR4K15Q8NH41 348 aa17.9■□□□□ 0.46
SHKBP1-225ENST00000600733 ZC3H10Q96K80 434 aaKnown RBP17.9■□□□□ 0.46
SHKBP1-225ENST00000600733 MBD2Q9UBB5 411 aa17.9■□□□□ 0.46
SHKBP1-225ENST00000600733 MRPS28Q9Y2Q9 187 aaKnown RBP17.9■□□□□ 0.46
SHKBP1-225ENST00000600733 ZNF17P17021 662 aa17.89■□□□□ 0.46
SHKBP1-225ENST00000600733 SFTPDP35247 375 aa17.89■□□□□ 0.46
SHKBP1-225ENST00000600733 MOB3CQ70IA8 216 aa17.89■□□□□ 0.46
SHKBP1-225ENST00000600733 TMEM41AQ96HV5 264 aa17.89■□□□□ 0.46
SHKBP1-225ENST00000600733 C1orf147Q96MC9 270 aaPredicted RBP17.89■□□□□ 0.46
SHKBP1-225ENST00000600733 MYOTQ9UBF9 498 aa17.89■□□□□ 0.46
SHKBP1-225ENST00000600733 VPS13AQ96RL7 3174 aa17.89■□□□□ 0.45
SHKBP1-225ENST00000600733 SULT2B1O00204 365 aa17.89■□□□□ 0.45
SHKBP1-225ENST00000600733 SCRG1O75711 98 aa17.89■□□□□ 0.45
SHKBP1-225ENST00000600733 GABREP78334 506 aa17.89■□□□□ 0.45
SHKBP1-225ENST00000600733 SLC25A53Q5H9E4 307 aa17.89■□□□□ 0.45
SHKBP1-225ENST00000600733 SCGNO76038 276 aa17.88■□□□□ 0.45
SHKBP1-225ENST00000600733 DUS4LO95620 317 aaKnown RBP17.88■□□□□ 0.45
SHKBP1-225ENST00000600733 ZNF273Q14593 569 aa17.88■□□□□ 0.45
SHKBP1-225ENST00000600733 MICBQ29980 383 aa17.88■□□□□ 0.45
SHKBP1-225ENST00000600733 TMEM71Q6P5X7 295 aa17.88■□□□□ 0.45
SHKBP1-225ENST00000600733 OR2W3Q7Z3T1 314 aa17.88■□□□□ 0.45
SHKBP1-225ENST00000600733 THAP6Q8TBB0 222 aa17.88■□□□□ 0.45
SHKBP1-225ENST00000600733 MICU1Q9BPX6 476 aa17.88■□□□□ 0.45
SHKBP1-225ENST00000600733 LDAHQ9H6V9 325 aa17.88■□□□□ 0.45
SHKBP1-225ENST00000600733 C12orf4Q9NQ89 552 aa17.88■□□□□ 0.45
SHKBP1-225ENST00000600733 TAS2R3Q9NYW6 316 aa17.88■□□□□ 0.45
SHKBP1-225ENST00000600733 FBLN5Q9UBX5 448 aa17.88■□□□□ 0.45
SHKBP1-225ENST00000600733 PISDQ9UG56 409 aa17.88■□□□□ 0.45
SHKBP1-225ENST00000600733 EML6Q6ZMW3 1958 aa17.88■□□□□ 0.45
SHKBP1-225ENST00000600733 C13orf42A0A1B0GVH6 325 aa17.88■□□□□ 0.45
SHKBP1-225ENST00000600733 GSK3AP49840 483 aa17.88■□□□□ 0.45
SHKBP1-225ENST00000600733 LCN10Q6JVE6 187 aa17.88■□□□□ 0.45
SHKBP1-225ENST00000600733 FAHD2BQ6P2I3 314 aaPredicted RBP17.88■□□□□ 0.45
SHKBP1-225ENST00000600733 HOGA1Q86XE5 327 aa17.88■□□□□ 0.45
SHKBP1-225ENST00000600733 BOLLQ8N9W6 283 aaKnown RBP17.88■□□□□ 0.45
SHKBP1-225ENST00000600733 OR5L2Q8NGL0 311 aa17.88■□□□□ 0.45
SHKBP1-225ENST00000600733 RAB3CQ96E17 227 aa17.88■□□□□ 0.45
SHKBP1-225ENST00000600733 FAHD2AQ96GK7 314 aa17.88■□□□□ 0.45
SHKBP1-225ENST00000600733 MOB1AQ9H8S9 216 aa17.88■□□□□ 0.45
SHKBP1-225ENST00000600733 PNRC2Q9NPJ4 139 aaKnown RBP17.88■□□□□ 0.45
SHKBP1-225ENST00000600733 NCOA6Q14686 2063 aaPredicted RBP17.87■□□□□ 0.45
SHKBP1-225ENST00000600733 C5orf51A6NDU8 294 aa17.87■□□□□ 0.45
SHKBP1-225ENST00000600733 CDC14BO60729 498 aa17.87■□□□□ 0.45
SHKBP1-225ENST00000600733 RAD51DO75771 328 aa17.87■□□□□ 0.45
SHKBP1-225ENST00000600733 HCKP08631 526 aa17.87■□□□□ 0.45
SHKBP1-225ENST00000600733 MSX1P28360 303 aa17.87■□□□□ 0.45
SHKBP1-225ENST00000600733 DCDP81605 110 aaKnown RBP17.87■□□□□ 0.45
SHKBP1-225ENST00000600733 SHBQ15464 509 aa17.87■□□□□ 0.45
SHKBP1-225ENST00000600733 SLC25A47Q6Q0C1 308 aa17.87■□□□□ 0.45
SHKBP1-225ENST00000600733 UNQ6126/PRO20091Q6UXV3 157 aa17.87■□□□□ 0.45
SHKBP1-225ENST00000600733 CPEB2Q7Z5Q1 589 aaKnown RBP17.87■□□□□ 0.45
SHKBP1-225ENST00000600733 FBXW5Q969U6 566 aa17.87■□□□□ 0.45
SHKBP1-225ENST00000600733 C5orf63A6NC05 138 aa17.87■□□□□ 0.45
SHKBP1-225ENST00000600733 F5H0A9 414 aaPredicted RBP17.87■□□□□ 0.45
SHKBP1-225ENST00000600733 QDPRP09417 244 aa17.87■□□□□ 0.45
SHKBP1-225ENST00000600733 CNR1P21554 472 aa17.87■□□□□ 0.45
SHKBP1-225ENST00000600733 CX3CR1P49238 355 aa17.87■□□□□ 0.45
SHKBP1-225ENST00000600733 TMEM50BP56557 158 aa17.87■□□□□ 0.45
SHKBP1-225ENST00000600733 FAM57BQ71RH2 274 aa17.87■□□□□ 0.45
SHKBP1-225ENST00000600733 INO80EQ8NBZ0 244 aaPredicted RBP17.87■□□□□ 0.45
SHKBP1-225ENST00000600733 DNASE2BQ8WZ79 361 aa17.87■□□□□ 0.45
SHKBP1-225ENST00000600733 NUDT16L1Q9BRJ7 211 aaKnown RBP17.87■□□□□ 0.45
SHKBP1-225ENST00000600733 GAREM1Q9H706 876 aa17.87■□□□□ 0.45
SHKBP1-225ENST00000600733 GLS2Q9UI32 602 aa17.87■□□□□ 0.45
SHKBP1-225ENST00000600733 A0A1B0GW55 424 aa17.86■□□□□ 0.45
SHKBP1-225ENST00000600733 E9PLN8 166 aa17.86■□□□□ 0.45
SHKBP1-225ENST00000600733 ZFAND5O76080 213 aa17.86■□□□□ 0.45
SHKBP1-225ENST00000600733 CHRM2P08172 466 aa17.86■□□□□ 0.45
SHKBP1-225ENST00000600733 DUX4L2P0CJ85 424 aa17.86■□□□□ 0.45
SHKBP1-225ENST00000600733 DUX4L3P0CJ86 424 aa17.86■□□□□ 0.45
SHKBP1-225ENST00000600733 DUX4L4P0CJ87 422 aa17.86■□□□□ 0.45
SHKBP1-225ENST00000600733 DUX4L5P0CJ88 424 aa17.86■□□□□ 0.45
SHKBP1-225ENST00000600733 DUX4L6P0CJ89 424 aa17.86■□□□□ 0.45
SHKBP1-225ENST00000600733 DUX4L7P0CJ90 424 aa17.86■□□□□ 0.45
SHKBP1-225ENST00000600733 HIST1H1DP16402 221 aaKnown RBP17.86■□□□□ 0.45
SHKBP1-225ENST00000600733 TBPP20226 339 aa17.86■□□□□ 0.45
SHKBP1-225ENST00000600733 SERPINF1P36955 418 aa17.86■□□□□ 0.45
SHKBP1-225ENST00000600733 ARHGDIBP52566 201 aa17.86■□□□□ 0.45
SHKBP1-225ENST00000600733 ACY1Q03154 408 aa17.86■□□□□ 0.45
SHKBP1-225ENST00000600733 GUSBP11Q6P575 273 aa17.86■□□□□ 0.45
SHKBP1-225ENST00000600733 TMPPEQ6ZT21 453 aa17.86■□□□□ 0.45
SHKBP1-225ENST00000600733 OR2M3Q8NG83 312 aa17.86■□□□□ 0.45
SHKBP1-225ENST00000600733 CRB3Q9BUF7 120 aa17.86■□□□□ 0.45
SHKBP1-225ENST00000600733 TMEM59Q9BXS4 323 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms