RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 LOC100506127A0A0U1RQW1 187 aa10.93□□□□□ -0.66
UPF1-208ENST00000600012 A0A1W2PR80 420 aa10.93□□□□□ -0.66
UPF1-208ENST00000600012 SYNGR3O43761 229 aa10.93□□□□□ -0.66
UPF1-208ENST00000600012 NOL3O60936 208 aaKnown RBP10.93□□□□□ -0.66
UPF1-208ENST00000600012 SRSF10O75494 262 aaKnown RBP10.93□□□□□ -0.66
UPF1-208ENST00000600012 GABARAPO95166 117 aa10.93□□□□□ -0.66
UPF1-208ENST00000600012 CD79AP11912 226 aa10.93□□□□□ -0.66
UPF1-208ENST00000600012 PTAFRP25105 342 aa10.93□□□□□ -0.66
UPF1-208ENST00000600012 TGFBR1P36897 503 aa10.93□□□□□ -0.66
UPF1-208ENST00000600012 HTR5AP47898 357 aa10.93□□□□□ -0.66
UPF1-208ENST00000600012 PSG4Q00888 419 aa10.93□□□□□ -0.66
UPF1-208ENST00000600012 MRPL28Q13084 256 aaKnown RBP10.93□□□□□ -0.66
UPF1-208ENST00000600012 GABRA6Q16445 453 aa10.93□□□□□ -0.66
UPF1-208ENST00000600012 SLC36A2Q495M3 483 aa10.93□□□□□ -0.66
UPF1-208ENST00000600012 PABPC1L2AQ5JQF8 200 aa10.93□□□□□ -0.66
UPF1-208ENST00000600012 RPL22L1Q6P5R6 122 aaKnown RBP10.93□□□□□ -0.66
UPF1-208ENST00000600012 DEGS2Q6QHC5 323 aa10.93□□□□□ -0.66
UPF1-208ENST00000600012 CLEC2AQ6UVW9 174 aa10.93□□□□□ -0.66
UPF1-208ENST00000600012 SYT9Q86SS6 491 aa10.93□□□□□ -0.66
UPF1-208ENST00000600012 PIAS4Q8N2W9 510 aaPredicted RBP10.93□□□□□ -0.66
UPF1-208ENST00000600012 PRSS35Q8N3Z0 413 aa10.93□□□□□ -0.66
UPF1-208ENST00000600012 ZNF283Q8N7M2 679 aa10.93□□□□□ -0.66
UPF1-208ENST00000600012 OR13C5Q8NGS8 318 aa10.93□□□□□ -0.66
UPF1-208ENST00000600012 OR2G2Q8NGZ5 317 aa10.93□□□□□ -0.66
UPF1-208ENST00000600012 RPS4Y2Q8TD47 263 aa10.93□□□□□ -0.66
UPF1-208ENST00000600012 PPP1R14AQ96A00 147 aa10.93□□□□□ -0.66
UPF1-208ENST00000600012 C12orf43Q96C57 262 aaKnown RBP10.93□□□□□ -0.66
UPF1-208ENST00000600012 DCLRE1CQ96SD1 692 aaKnown RBP10.93□□□□□ -0.66
UPF1-208ENST00000600012 CACNG6Q9BXT2 260 aa10.93□□□□□ -0.66
UPF1-208ENST00000600012 HDHD2Q9H0R4 259 aa10.93□□□□□ -0.66
UPF1-208ENST00000600012 EXOSC4Q9NPD3 245 aaKnown RBP10.93□□□□□ -0.66
UPF1-208ENST00000600012 BRD7Q9NPI1 651 aa10.93□□□□□ -0.66
UPF1-208ENST00000600012 CBLN4Q9NTU7 201 aa10.93□□□□□ -0.66
UPF1-208ENST00000600012 FRRS1LQ9P0K9 344 aa10.93□□□□□ -0.66
UPF1-208ENST00000600012 POU2F3Q9UKI9 436 aa10.93□□□□□ -0.66
UPF1-208ENST00000600012 SLC22A13Q9Y226 551 aa10.93□□□□□ -0.66
UPF1-208ENST00000600012 TIMM10BQ9Y5J6 103 aa10.93□□□□□ -0.66
UPF1-208ENST00000600012 R4GMQ9 66 aa10.93□□□□□ -0.66
UPF1-208ENST00000600012 A0A096LNT2 108 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 LOC110117498-PIK3R3F6TDL0 507 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 H3BMQ9 156 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 PLPP2O43688 288 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 AIREO43918 545 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 GPX5O75715 221 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 DBHP09172 617 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 FAM157CP0CG43 387 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 SLC2A1P11166 492 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 ANOS1P23352 680 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 GABRA5P31644 462 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 CRYBB2P43320 205 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 CX3CR1P49238 355 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 TMBIM6P55061 237 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 PSMA6P60900 246 aaKnown RBP10.92□□□□□ -0.66
UPF1-208ENST00000600012 NCS1P62166 190 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 GRB2P62993 217 aaKnown RBP10.92□□□□□ -0.66
UPF1-208ENST00000600012 GALK2Q01415 458 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 FABP5Q01469 135 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 TGFBR3Q03167 851 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 INSL4Q14641 139 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 ODF4Q2M2E3 257 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 TMEM249Q2WGJ8 235 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 ZNF829Q3KNS6 432 aaPredicted RBP10.92□□□□□ -0.66
UPF1-208ENST00000600012 CCDC58Q4VC31 144 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 C11orf71Q6IPW1 123 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 TMEM53Q6P2H8 277 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 FDX2Q6P4F2 183 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 SLC22A25Q6T423 547 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 MDP1Q86V88 176 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 CATSPERDQ86XM0 798 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 EGFL6Q8IUX8 553 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 FBXL14Q8N1E6 418 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 OR1F12Q8NHA8 337 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 ZNF420Q8TAQ5 688 aaPredicted RBP10.92□□□□□ -0.66
UPF1-208ENST00000600012 HAVCR2Q8TDQ0 301 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 NANOS1Q8WY41 292 aaKnown RBP10.92□□□□□ -0.66
UPF1-208ENST00000600012 RGP1Q92546 391 aaPredicted RBP10.92□□□□□ -0.66
UPF1-208ENST00000600012 GHSRQ92847 366 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 KCNJ15Q99712 375 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 DHRS9Q9BPW9 319 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 PDCD1LG2Q9BQ51 273 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 WACQ9BTA9 647 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 RNF167Q9H6Y7 350 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 G6PC2Q9NQR9 355 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 FAM206AQ9NX38 181 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 CDC42EP3Q9UKI2 254 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 STUB1Q9UNE7 303 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 N6AMT1Q9Y5N5 214 aa10.92□□□□□ -0.66
UPF1-208ENST00000600012 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.91□□□□□ -0.662e-10■■■■□ 22.9
UPF1-208ENST00000600012 TMEM269A0A1B0GVZ9 245 aa10.91□□□□□ -0.66
UPF1-208ENST00000600012 OR6C6A6NF89 314 aa10.91□□□□□ -0.66
UPF1-208ENST00000600012 OR4C45A6NMZ5 311 aa10.91□□□□□ -0.66
UPF1-208ENST00000600012 E7EQL1 145 aa10.91□□□□□ -0.66
UPF1-208ENST00000600012 F5H5K5 113 aa10.91□□□□□ -0.66
UPF1-208ENST00000600012 H3BSH0 61 aa10.91□□□□□ -0.66
UPF1-208ENST00000600012 GPRIN2O60269 458 aa10.91□□□□□ -0.66
UPF1-208ENST00000600012 RGS9O75916 674 aaPredicted RBP10.91□□□□□ -0.66
UPF1-208ENST00000600012 ZFPL1O95159 310 aa10.91□□□□□ -0.66
UPF1-208ENST00000600012 UBL3O95164 117 aa10.91□□□□□ -0.66
UPF1-208ENST00000600012 SLC25A16P16260 332 aa10.91□□□□□ -0.66
UPF1-208ENST00000600012 PSMA1P25786 263 aaKnown RBP10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms