RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 NOP16Q9Y3C1 178 aaKnown RBP12.62□□□□□ -0.39
LIG1-215ENST00000597901 AUP1Q9Y679 476 aa12.62□□□□□ -0.39
LIG1-215ENST00000597901 DYSFO75923 2080 aa12.61□□□□□ -0.39
LIG1-215ENST00000597901 PRR23D1E9PI22 279 aaPredicted RBP12.61□□□□□ -0.39
LIG1-215ENST00000597901 GSC2O15499 205 aa12.61□□□□□ -0.39
LIG1-215ENST00000597901 FAM20BO75063 409 aa12.61□□□□□ -0.39
LIG1-215ENST00000597901 FKBP6O75344 327 aa12.61□□□□□ -0.39
LIG1-215ENST00000597901 PTBP3O95758 552 aaKnown RBP12.61□□□□□ -0.39
LIG1-215ENST00000597901 PRR23D2P0DMB1 279 aaPredicted RBP12.61□□□□□ -0.39
LIG1-215ENST00000597901 ANXA8P13928 327 aa12.61□□□□□ -0.39
LIG1-215ENST00000597901 PAICSP22234 425 aaKnown RBP12.61□□□□□ -0.39
LIG1-215ENST00000597901 FPR2P25090 351 aa12.61□□□□□ -0.39
LIG1-215ENST00000597901 CD80P33681 288 aa12.61□□□□□ -0.39
LIG1-215ENST00000597901 HILS1P60008 231 aa12.61□□□□□ -0.39
LIG1-215ENST00000597901 PAX8Q06710 450 aa12.61□□□□□ -0.39
LIG1-215ENST00000597901 ZNF404Q494X3 552 aa12.61□□□□□ -0.39
LIG1-215ENST00000597901 PLBD1Q6P4A8 553 aa12.61□□□□□ -0.39
LIG1-215ENST00000597901 RHOUQ7L0Q8 258 aa12.61□□□□□ -0.39
LIG1-215ENST00000597901 SHFQ7M4L6 423 aa12.61□□□□□ -0.39
LIG1-215ENST00000597901 TIGD4Q8IY51 512 aa12.61□□□□□ -0.39
LIG1-215ENST00000597901 SPERTQ8NA61 448 aa12.61□□□□□ -0.39
LIG1-215ENST00000597901 PLPP7Q8NBV4 271 aa12.61□□□□□ -0.39
LIG1-215ENST00000597901 OR6N2Q8NGY6 317 aa12.61□□□□□ -0.39
LIG1-215ENST00000597901 RNF133Q8WVZ7 376 aa12.61□□□□□ -0.39
LIG1-215ENST00000597901 SPSB4Q96A44 273 aa12.61□□□□□ -0.39
LIG1-215ENST00000597901 NEIL1Q96FI4 390 aaPredicted RBP12.61□□□□□ -0.39
LIG1-215ENST00000597901 AMELYQ99218 206 aa12.61□□□□□ -0.39
LIG1-215ENST00000597901 SSBP3Q9BWW4 388 aaPredicted RBP12.61□□□□□ -0.39
LIG1-215ENST00000597901 SP140LQ9H930 580 aa12.61□□□□□ -0.39
LIG1-215ENST00000597901 RNF7Q9UBF6 113 aa12.61□□□□□ -0.39
LIG1-215ENST00000597901 LRCH1Q9Y2L9 728 aa12.61□□□□□ -0.39
LIG1-215ENST00000597901 TBX1O43435 398 aa12.6□□□□□ -0.39
LIG1-215ENST00000597901 XRCC2O43543 280 aa12.6□□□□□ -0.39
LIG1-215ENST00000597901 APOC1P02654 83 aa12.6□□□□□ -0.39
LIG1-215ENST00000597901 ANXA2P07355 339 aaKnown RBP12.6□□□□□ -0.39
LIG1-215ENST00000597901 RPS2P15880 293 aaKnown RBP12.6□□□□□ -0.39
LIG1-215ENST00000597901 HSD11B1P28845 292 aa12.6□□□□□ -0.39
LIG1-215ENST00000597901 DDOSTP39656 456 aa12.6□□□□□ -0.39
LIG1-215ENST00000597901 CX3CR1P49238 355 aa12.6□□□□□ -0.39
LIG1-215ENST00000597901 GNB2P62879 340 aa12.6□□□□□ -0.39
LIG1-215ENST00000597901 PAX2Q02962 417 aa12.6□□□□□ -0.39
LIG1-215ENST00000597901 LYPD2Q6UXB3 125 aa12.6□□□□□ -0.39
LIG1-215ENST00000597901 C12orf54Q6X4T0 127 aa12.6□□□□□ -0.39
LIG1-215ENST00000597901 PRSS45Q7RTY3 260 aa12.6□□□□□ -0.39
LIG1-215ENST00000597901 CPOQ8IVL8 374 aa12.6□□□□□ -0.39
LIG1-215ENST00000597901 BPIFB2Q8N4F0 458 aa12.6□□□□□ -0.39
LIG1-215ENST00000597901 C19orf18Q8NEA5 215 aa12.6□□□□□ -0.39
LIG1-215ENST00000597901 OR56B2PQ8NGI1 322 aa12.6□□□□□ -0.39
LIG1-215ENST00000597901 C22orf15Q8WYQ4 148 aa12.6□□□□□ -0.39
LIG1-215ENST00000597901 DVL3Q92997 716 aaPredicted RBP12.6□□□□□ -0.39
LIG1-215ENST00000597901 ZMYND19Q96E35 227 aaPredicted RBP12.6□□□□□ -0.39
LIG1-215ENST00000597901 SLC6A7Q99884 636 aa12.6□□□□□ -0.39
LIG1-215ENST00000597901 SUCNR1Q9BXA5 334 aa12.6□□□□□ -0.39
LIG1-215ENST00000597901 CADM1Q9BY67 442 aaKnown RBP12.6□□□□□ -0.39
LIG1-215ENST00000597901 FN3KRPQ9HA64 309 aa12.6□□□□□ -0.39
LIG1-215ENST00000597901 NTN4Q9HB63 628 aa12.6□□□□□ -0.39
LIG1-215ENST00000597901 OR5V1Q9UGF6 321 aa12.6□□□□□ -0.39
LIG1-215ENST00000597901 KIR2DS1A0A191URI9 304 aa12.59□□□□□ -0.39
LIG1-215ENST00000597901 TRIM77I1YAP6 450 aa12.59□□□□□ -0.39
LIG1-215ENST00000597901 GRPP07492 148 aa12.59□□□□□ -0.39
LIG1-215ENST00000597901 OPRL1P41146 370 aa12.59□□□□□ -0.39
LIG1-215ENST00000597901 FAM3AP98173 230 aa12.59□□□□□ -0.39
LIG1-215ENST00000597901 HOXA4Q00056 320 aaPredicted RBP12.59□□□□□ -0.39
LIG1-215ENST00000597901 BNIP1Q12981 228 aa12.59□□□□□ -0.39
LIG1-215ENST00000597901 KLHL12Q53G59 568 aa12.59□□□□□ -0.39
LIG1-215ENST00000597901 KLF17Q5JT82 389 aaPredicted RBP12.59□□□□□ -0.39
LIG1-215ENST00000597901 TMEM236Q5W0B7 351 aa12.59□□□□□ -0.39
LIG1-215ENST00000597901 FAM57BQ71RH2 274 aa12.59□□□□□ -0.39
LIG1-215ENST00000597901 SLC16A9Q7RTY1 509 aa12.59□□□□□ -0.39
LIG1-215ENST00000597901 FAM216AQ8WUB2 273 aa12.59□□□□□ -0.39
LIG1-215ENST00000597901 THEM6Q8WUY1 208 aa12.59□□□□□ -0.39
LIG1-215ENST00000597901 RAB40AQ8WXH6 277 aa12.59□□□□□ -0.39
LIG1-215ENST00000597901 NRBF2Q96F24 287 aa12.59□□□□□ -0.39
LIG1-215ENST00000597901 PLEKHA8Q96JA3 519 aa12.59□□□□□ -0.39
LIG1-215ENST00000597901 JMJD8Q96S16 334 aa12.59□□□□□ -0.39
LIG1-215ENST00000597901 ADAT1Q9BUB4 502 aaKnown RBP12.59□□□□□ -0.39
LIG1-215ENST00000597901 MRI1Q9BV20 369 aa12.59□□□□□ -0.39
LIG1-215ENST00000597901 OPA3Q9H6K4 179 aa12.59□□□□□ -0.39
LIG1-215ENST00000597901 ZNF319Q9P2F9 582 aa12.59□□□□□ -0.39
LIG1-215ENST00000597901 NUP50Q9UKX7 468 aa12.59□□□□□ -0.39
LIG1-215ENST00000597901 ANKRD30BLA7E2S9 258 aa12.58□□□□□ -0.4
LIG1-215ENST00000597901 TNFRSF13BO14836 293 aaPredicted RBP12.58□□□□□ -0.4
LIG1-215ENST00000597901 SELENOFO60613 162 aa12.58□□□□□ -0.4
LIG1-215ENST00000597901 H2BFMP0C1H6 154 aa12.58□□□□□ -0.4
LIG1-215ENST00000597901 ZNF121P58317 390 aaPredicted RBP12.58□□□□□ -0.4
LIG1-215ENST00000597901 MZT1Q08AG7 82 aa12.58□□□□□ -0.4
LIG1-215ENST00000597901 TIGD6Q17RP2 521 aa12.58□□□□□ -0.4
LIG1-215ENST00000597901 SFRP4Q6FHJ7 346 aaPredicted RBP12.58□□□□□ -0.4
LIG1-215ENST00000597901 LRRN1Q6UXK5 716 aa12.58□□□□□ -0.4
LIG1-215ENST00000597901 ZNF841Q6ZN19 808 aa12.58□□□□□ -0.4
LIG1-215ENST00000597901 DCDC5Q6ZRR9 648 aa12.58□□□□□ -0.4
LIG1-215ENST00000597901 ZNF826PQ6ZT77 177 aa12.58□□□□□ -0.4
LIG1-215ENST00000597901 NLRC3Q7RTR2 1065 aa12.58□□□□□ -0.4
LIG1-215ENST00000597901 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.58□□□□□ -0.4
LIG1-215ENST00000597901 ZNF454Q8N9F8 522 aa12.58□□□□□ -0.4
LIG1-215ENST00000597901 BOLLQ8N9W6 283 aaKnown RBP12.58□□□□□ -0.4
LIG1-215ENST00000597901 OR8B3Q8NGG8 313 aa12.58□□□□□ -0.4
LIG1-215ENST00000597901 OR52H1Q8NGJ2 320 aa12.58□□□□□ -0.4
LIG1-215ENST00000597901 OTOSQ8NHW6 89 aa12.58□□□□□ -0.4
LIG1-215ENST00000597901 UTP4Q969X6 686 aaKnown RBP12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms