RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 MAB21L1Q13394 359 aa12.7□□□□□ -0.38
TRIM28-205ENST00000595028 APOFQ13790 326 aa12.7□□□□□ -0.38
TRIM28-205ENST00000595028 PTGES3Q15185 160 aaKnown RBP12.7□□□□□ -0.38
TRIM28-205ENST00000595028 ZNF181Q2M3W8 571 aa12.7□□□□□ -0.38
TRIM28-205ENST00000595028 KDM4DQ6B0I6 523 aa12.7□□□□□ -0.38
TRIM28-205ENST00000595028 PRSS45Q7RTY3 260 aa12.7□□□□□ -0.38
TRIM28-205ENST00000595028 AMIGO2Q86SJ2 522 aa12.7□□□□□ -0.38
TRIM28-205ENST00000595028 ZDHHC13Q8IUH4 622 aa12.7□□□□□ -0.38
TRIM28-205ENST00000595028 MUC20Q8N307 709 aaPredicted RBP12.7□□□□□ -0.38
TRIM28-205ENST00000595028 KLHL36Q8N4N3 616 aa12.7□□□□□ -0.38
TRIM28-205ENST00000595028 OR4M2Q8NGB6 313 aa12.7□□□□□ -0.38
TRIM28-205ENST00000595028 LRTOMTQ8WZ04 291 aa12.7□□□□□ -0.38
TRIM28-205ENST00000595028 SP140LQ9H930 580 aa12.7□□□□□ -0.38
TRIM28-205ENST00000595028 DNAJC27Q9NZQ0 273 aa12.7□□□□□ -0.38
TRIM28-205ENST00000595028 KLHDC2Q9Y2U9 406 aa12.7□□□□□ -0.38
TRIM28-205ENST00000595028 N6AMT1Q9Y5N5 214 aa12.7□□□□□ -0.38
TRIM28-205ENST00000595028 CCDC182A6NF36 153 aa12.69□□□□□ -0.38
TRIM28-205ENST00000595028 LRRC30A6NM36 301 aa12.69□□□□□ -0.38
TRIM28-205ENST00000595028 F5H0A9 414 aaPredicted RBP12.69□□□□□ -0.38
TRIM28-205ENST00000595028 PRKYO43930 277 aa12.69□□□□□ -0.38
TRIM28-205ENST00000595028 CYB5R3P00387 301 aaPredicted RBP12.69□□□□□ -0.38
TRIM28-205ENST00000595028 H2BFMP0C1H6 154 aa12.69□□□□□ -0.38
TRIM28-205ENST00000595028 OR8G1Q15617 311 aa12.69□□□□□ -0.38
TRIM28-205ENST00000595028 TIGD6Q17RP2 521 aa12.69□□□□□ -0.38
TRIM28-205ENST00000595028 LCN1P1Q5VSP4 162 aa12.69□□□□□ -0.38
TRIM28-205ENST00000595028 PRAMEF6Q5VXH4 476 aa12.69□□□□□ -0.38
TRIM28-205ENST00000595028 SLX4IPQ5VYV7 408 aa12.69□□□□□ -0.38
TRIM28-205ENST00000595028 FAM57BQ71RH2 274 aa12.69□□□□□ -0.38
TRIM28-205ENST00000595028 LRRC28Q86X40 367 aaPredicted RBP12.69□□□□□ -0.38
TRIM28-205ENST00000595028 OR52H1Q8NGJ2 320 aa12.69□□□□□ -0.38
TRIM28-205ENST00000595028 Q8TCH9 128 aa12.69□□□□□ -0.38
TRIM28-205ENST00000595028 DVL3Q92997 716 aaPredicted RBP12.69□□□□□ -0.38
TRIM28-205ENST00000595028 ERGIC1Q969X5 290 aa12.69□□□□□ -0.38
TRIM28-205ENST00000595028 PATZ1Q9HBE1 687 aaKnown RBP12.69□□□□□ -0.38
TRIM28-205ENST00000595028 ENOPH1Q9UHY7 261 aa12.69□□□□□ -0.38
TRIM28-205ENST00000595028 PCDHB10Q9UN67 800 aa12.69□□□□□ -0.38
TRIM28-205ENST00000595028 hCG_38984A0A1B0GV85 526 aa12.68□□□□□ -0.38
TRIM28-205ENST00000595028 ZAR1LA6NP61 321 aa12.68□□□□□ -0.38
TRIM28-205ENST00000595028 CEACAM18A8MTB9 384 aa12.68□□□□□ -0.38
TRIM28-205ENST00000595028 M0R129 80 aa12.68□□□□□ -0.38
TRIM28-205ENST00000595028 GMDSO60547 372 aa12.68□□□□□ -0.38
TRIM28-205ENST00000595028 FOXH1O75593 365 aa12.68□□□□□ -0.38
TRIM28-205ENST00000595028 PTBP3O95758 552 aaKnown RBP12.68□□□□□ -0.38
TRIM28-205ENST00000595028 ALOX5APP20292 161 aa12.68□□□□□ -0.38
TRIM28-205ENST00000595028 EPHA2P29317 976 aa12.68□□□□□ -0.38
TRIM28-205ENST00000595028 PMELP40967 661 aa12.68□□□□□ -0.38
TRIM28-205ENST00000595028 PSMA6P60900 246 aaKnown RBP12.68□□□□□ -0.38
TRIM28-205ENST00000595028 SRSF2Q01130 221 aaKnown RBP12.68□□□□□ -0.38
TRIM28-205ENST00000595028 FAHD2BQ6P2I3 314 aaPredicted RBP12.68□□□□□ -0.38
TRIM28-205ENST00000595028 CCDC121Q6ZUS5 278 aa12.68□□□□□ -0.38
TRIM28-205ENST00000595028 SLC16A9Q7RTY1 509 aa12.68□□□□□ -0.38
TRIM28-205ENST00000595028 C1orf87Q8N0U7 546 aa12.68□□□□□ -0.38
TRIM28-205ENST00000595028 THEM6Q8WUY1 208 aa12.68□□□□□ -0.38
TRIM28-205ENST00000595028 FAHD2AQ96GK7 314 aa12.68□□□□□ -0.38
TRIM28-205ENST00000595028 CENPNQ96H22 339 aaPredicted RBP12.68□□□□□ -0.38
TRIM28-205ENST00000595028 REEP6Q96HR9 211 aa12.68□□□□□ -0.38
TRIM28-205ENST00000595028 OR10A2Q9H208 303 aa12.68□□□□□ -0.38
TRIM28-205ENST00000595028 DOCK11Q5JSL3 2073 aa12.68□□□□□ -0.38
TRIM28-205ENST00000595028 A8MXK9 166 aa12.67□□□□□ -0.38
TRIM28-205ENST00000595028 J3QLI3 93 aa12.67□□□□□ -0.38
TRIM28-205ENST00000595028 KCNAB3O43448 404 aa12.67□□□□□ -0.38
TRIM28-205ENST00000595028 FAM20BO75063 409 aa12.67□□□□□ -0.38
TRIM28-205ENST00000595028 FSTL3O95633 263 aa12.67□□□□□ -0.38
TRIM28-205ENST00000595028 MRPL3P09001 348 aaKnown RBP12.67□□□□□ -0.38
TRIM28-205ENST00000595028 CFL1P23528 166 aaKnown RBP12.67□□□□□ -0.38
TRIM28-205ENST00000595028 GATA3P23771 443 aa12.67□□□□□ -0.38
TRIM28-205ENST00000595028 DDOSTP39656 456 aa12.67□□□□□ -0.38
TRIM28-205ENST00000595028 ACTR3P61158 418 aa12.67□□□□□ -0.38
TRIM28-205ENST00000595028 SEC61A1P61619 476 aaKnown RBP12.67□□□□□ -0.38
TRIM28-205ENST00000595028 LCN2P80188 198 aa12.67□□□□□ -0.38
TRIM28-205ENST00000595028 FAM3AP98173 230 aa12.67□□□□□ -0.38
TRIM28-205ENST00000595028 GFOD2Q3B7J2 385 aa12.67□□□□□ -0.38
TRIM28-205ENST00000595028 DCAF12L2Q5VW00 463 aa12.67□□□□□ -0.38
TRIM28-205ENST00000595028 C12orf73Q69YU5 71 aa12.67□□□□□ -0.38
TRIM28-205ENST00000595028 LRRN1Q6UXK5 716 aa12.67□□□□□ -0.38
TRIM28-205ENST00000595028 KLBQ86Z14 1044 aa12.67□□□□□ -0.38
TRIM28-205ENST00000595028 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.67□□□□□ -0.38
TRIM28-205ENST00000595028 TEX29Q8N6K0 151 aa12.67□□□□□ -0.38
TRIM28-205ENST00000595028 OR11L1Q8NGX0 322 aa12.67□□□□□ -0.38
TRIM28-205ENST00000595028 SGK3Q96BR1 496 aa12.67□□□□□ -0.38
TRIM28-205ENST00000595028 PGAM5Q96HS1 289 aa12.67□□□□□ -0.38
TRIM28-205ENST00000595028 CIB1Q99828 191 aa12.67□□□□□ -0.38
TRIM28-205ENST00000595028 TMPRSS13Q9BYE2 586 aa12.67□□□□□ -0.38
TRIM28-205ENST00000595028 YIPF3Q9GZM5 350 aa12.67□□□□□ -0.38
TRIM28-205ENST00000595028 SEMA6AQ9H2E6 1030 aa12.67□□□□□ -0.38
TRIM28-205ENST00000595028 RGCCQ9H4X1 137 aa12.67□□□□□ -0.38
TRIM28-205ENST00000595028 NIPAL2Q9H841 368 aa12.67□□□□□ -0.38
TRIM28-205ENST00000595028 BRD7Q9NPI1 651 aa12.67□□□□□ -0.38
TRIM28-205ENST00000595028 UFSP2Q9NUQ7 469 aa12.67□□□□□ -0.38
TRIM28-205ENST00000595028 ZNF319Q9P2F9 582 aa12.67□□□□□ -0.38
TRIM28-205ENST00000595028 LAMP5Q9UJQ1 280 aa12.67□□□□□ -0.38
TRIM28-205ENST00000595028 OAZ3Q9UMX2 235 aa12.67□□□□□ -0.38
TRIM28-205ENST00000595028 TENM1Q9UKZ4 2725 aa12.67□□□□□ -0.38
TRIM28-205ENST00000595028 PPIAL4EA0A075B759 164 aa12.66□□□□□ -0.38
TRIM28-205ENST00000595028 PPIAL4CA0A0B4J2A2 164 aa12.66□□□□□ -0.38
TRIM28-205ENST00000595028 SAC3D1A6NKF1 404 aa12.66□□□□□ -0.38
TRIM28-205ENST00000595028 PPIAL4DF5H284 164 aa12.66□□□□□ -0.38
TRIM28-205ENST00000595028 ZNF205O95201 554 aa12.66□□□□□ -0.38
TRIM28-205ENST00000595028 AVPP01185 164 aa12.66□□□□□ -0.38
TRIM28-205ENST00000595028 PPIAL4FP0DN26 164 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 348.5 ms