RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 TBX5Q99593 518 aa3.68□□□□□ -1.82
LIG3-211ENST00000588713 GFI1Q99684 422 aa3.68□□□□□ -1.82
LIG3-211ENST00000588713 MCHR1Q99705 422 aa3.68□□□□□ -1.82
LIG3-211ENST00000588713 VRK1Q99986 396 aaPredicted RBP3.68□□□□□ -1.82
LIG3-211ENST00000588713 PRSS27Q9BQR3 290 aa3.68□□□□□ -1.82
LIG3-211ENST00000588713 SLC25A21Q9BQT8 299 aaPredicted RBP3.68□□□□□ -1.82
LIG3-211ENST00000588713 MESP1Q9BRJ9 268 aa3.68□□□□□ -1.82
LIG3-211ENST00000588713 SORBS1Q9BX66 1292 aaKnown RBP3.68□□□□□ -1.82
LIG3-211ENST00000588713 EGLN1Q9GZT9 426 aa3.68□□□□□ -1.82
LIG3-211ENST00000588713 C7orf69Q9H7B7 122 aa3.68□□□□□ -1.82
LIG3-211ENST00000588713 SEBOXQ9HB31 216 aaPredicted RBP3.68□□□□□ -1.82
LIG3-211ENST00000588713 TCF7L1Q9HCS4 588 aa3.68□□□□□ -1.82
LIG3-211ENST00000588713 POT1Q9NUX5 634 aa3.68□□□□□ -1.82
LIG3-211ENST00000588713 TMEM100Q9NV29 134 aa3.68□□□□□ -1.82
LIG3-211ENST00000588713 TMEM160Q9NX00 188 aa3.68□□□□□ -1.82
LIG3-211ENST00000588713 ANKRD10Q9NXR5 420 aa3.68□□□□□ -1.82
LIG3-211ENST00000588713 SLC2A8Q9NY64 477 aa3.68□□□□□ -1.82
LIG3-211ENST00000588713 COMMD9Q9P000 198 aa3.68□□□□□ -1.82
LIG3-211ENST00000588713 DHCR7Q9UBM7 475 aaKnown RBP3.68□□□□□ -1.82
LIG3-211ENST00000588713 METTL1Q9UBP6 276 aaKnown RBP3.68□□□□□ -1.82
LIG3-211ENST00000588713 OR5V1Q9UGF6 321 aa3.68□□□□□ -1.82
LIG3-211ENST00000588713 ICAM5Q9UMF0 924 aa3.68□□□□□ -1.82
LIG3-211ENST00000588713 CLEC4AQ9UMR7 237 aa3.68□□□□□ -1.82
LIG3-211ENST00000588713 ERVK-19Q9WJR5 959 aa3.68□□□□□ -1.82
LIG3-211ENST00000588713 AK6Q9Y3D8 172 aaKnown RBP3.68□□□□□ -1.82
LIG3-211ENST00000588713 ZNF337Q9Y3M9 751 aa3.68□□□□□ -1.82
LIG3-211ENST00000588713 PCYT1BQ9Y5K3 369 aaPredicted RBP3.68□□□□□ -1.82
LIG3-211ENST00000588713 HS3ST3B1Q9Y662 390 aa3.68□□□□□ -1.82
LIG3-211ENST00000588713 POMT1Q9Y6A1 747 aa3.68□□□□□ -1.82
LIG3-211ENST00000588713 V9GY05 133 aa3.68□□□□□ -1.82
LIG3-211ENST00000588713 NINQ8N4C6 2090 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 VWFP04275 2813 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 CPAMD8Q8IZJ3 1885 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 TRAV20A0A0B4J274 112 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 TRBV2A0A0J9YWF9 115 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 TRBV5-5A0A0J9YX44 114 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 TEX13DA0A0J9YY54 714 aaPredicted RBP3.67□□□□□ -1.82
LIG3-211ENST00000588713 ZC3H12DA2A288 527 aaKnown RBP3.67□□□□□ -1.82
LIG3-211ENST00000588713 C5orf52A6NGY3 159 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 DUXAA6NLW8 204 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 OR2AT4A6NND4 320 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 C2orf74A8MZ97 194 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 MAGEB4O15481 346 aaPredicted RBP3.67□□□□□ -1.82
LIG3-211ENST00000588713 LMX1BO60663 402 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 SRPX2O60687 465 aaPredicted RBP3.67□□□□□ -1.82
LIG3-211ENST00000588713 MTX2O75431 263 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 SLC25A12O75746 678 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 RBBP9O75884 186 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 HTR3BO95264 441 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 LYPD3O95274 346 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 IGHV2-70P01814 119 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 THY1P04216 161 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 RLN1P04808 185 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 HMGN2P05204 90 aaKnown RBP3.67□□□□□ -1.82
LIG3-211ENST00000588713 MRPL3P09001 348 aaKnown RBP3.67□□□□□ -1.82
LIG3-211ENST00000588713 BMP5P22003 454 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 MPZP25189 248 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 ZFP36P26651 326 aaKnown RBP3.67□□□□□ -1.82
LIG3-211ENST00000588713 CERS1P27544 350 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 NDUFS1P28331 727 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 PBLDP30039 288 aaPredicted RBP3.67□□□□□ -1.82
LIG3-211ENST00000588713 GPR1P46091 355 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 ZNF136P52737 540 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 PNLIPRP2P54317 469 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 EEF1A1P68104 462 aaKnown RBP3.67□□□□□ -1.82
LIG3-211ENST00000588713 SIRPAP78324 504 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 BLOC1S1P78537 153 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 TNFRSF17Q02223 184 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 TGM3Q08188 693 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 DUSP8Q13202 625 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 HABP2Q14520 560 aaPredicted RBP3.67□□□□□ -1.82
LIG3-211ENST00000588713 Q499Y3 187 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 C4orf46Q504U0 113 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 TP53I3Q53FA7 332 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 FAM74A1Q5RGS3 127 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 DNLZQ5SXM8 178 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 FAM120AOSQ5T036 256 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 ABHD17BQ5VST6 288 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 AWAT2Q6E213 333 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 MRM1Q6IN84 353 aaKnown RBP3.67□□□□□ -1.82
LIG3-211ENST00000588713 RAB12Q6IQ22 244 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 MFSD12Q6NUT3 480 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 FAAP20Q6NZ36 180 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 SLC48A1Q6P1K1 146 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 ZNF585AQ6P3V2 769 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 TMEM88Q6PEY1 159 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 ZNF613Q6PF04 617 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 FRRS1Q6ZNA5 592 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 ABHD13Q7L211 337 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 FCRLAQ7L513 359 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 SSX6Q7RTT6 188 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 GALNTL5Q7Z4T8 443 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 HSD11B1LQ7Z5J1 315 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 ZNF546Q86UE3 836 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 ANGPTL5Q86XS5 388 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 VRK2Q86Y07 508 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 MISPQ8IVT2 679 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 SERPINA12Q8IW75 414 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 CDK20Q8IZL9 346 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 RAB42Q8N4Z0 105 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms