RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 RPL15P61313 204 aaKnown RBP17.45■□□□□ 0.38
VPS53-216ENST00000574029 ZNF92Q03936 586 aa17.45■□□□□ 0.38
VPS53-216ENST00000574029 OR8B8Q15620 311 aa17.45■□□□□ 0.38
VPS53-216ENST00000574029 TRPM8Q7Z2W7 1104 aa17.45■□□□□ 0.38
VPS53-216ENST00000574029 RNF148Q8N7C7 305 aa17.45■□□□□ 0.38
VPS53-216ENST00000574029 PNLDC1Q8NA58 520 aaKnown RBP17.45■□□□□ 0.38
VPS53-216ENST00000574029 GATAD2BQ8WXI9 593 aa17.45■□□□□ 0.38
VPS53-216ENST00000574029 SPTSSAQ969W0 71 aa17.45■□□□□ 0.38
VPS53-216ENST00000574029 SIRPDQ9H106 197 aa17.45■□□□□ 0.38
VPS53-216ENST00000574029 SMURF1Q9HCE7 757 aa17.45■□□□□ 0.38
VPS53-216ENST00000574029 ACOXLQ9NUZ1 547 aa17.45■□□□□ 0.38
VPS53-216ENST00000574029 TRAV38-1A0A0B4J264 116 aa17.44■□□□□ 0.38
VPS53-216ENST00000574029 OOEPA6NGQ2 149 aa17.44■□□□□ 0.38
VPS53-216ENST00000574029 C3orf80F5H4A9 247 aa17.44■□□□□ 0.38
VPS53-216ENST00000574029 ADAM20O43506 726 aa17.44■□□□□ 0.38
VPS53-216ENST00000574029 GMNNO75496 209 aa17.44■□□□□ 0.38
VPS53-216ENST00000574029 ANOS1P23352 680 aa17.44■□□□□ 0.38
VPS53-216ENST00000574029 GSSP48637 474 aa17.44■□□□□ 0.38
VPS53-216ENST00000574029 SPIBQ01892 262 aa17.44■□□□□ 0.38
VPS53-216ENST00000574029 PDCD1Q15116 288 aa17.44■□□□□ 0.38
VPS53-216ENST00000574029 ZNF620Q6ZNG0 422 aa17.44■□□□□ 0.38
VPS53-216ENST00000574029 ARHGAP24Q8N264 748 aa17.44■□□□□ 0.38
VPS53-216ENST00000574029 BOLLQ8N9W6 283 aaKnown RBP17.44■□□□□ 0.38
VPS53-216ENST00000574029 SSMEM1Q8WWF3 244 aa17.44■□□□□ 0.38
VPS53-216ENST00000574029 PYURFQ96I23 114 aa17.44■□□□□ 0.38
VPS53-216ENST00000574029 TRIM15Q9C019 465 aa17.44■□□□□ 0.38
VPS53-216ENST00000574029 C1orf21Q9H246 121 aa17.44■□□□□ 0.38
VPS53-216ENST00000574029 MRPL15Q9P015 296 aaKnown RBP17.44■□□□□ 0.38
VPS53-216ENST00000574029 IGHV1-69DA0A0B4J2H0 117 aa17.43■□□□□ 0.38
VPS53-216ENST00000574029 C5orf63A6NC05 138 aa17.43■□□□□ 0.38
VPS53-216ENST00000574029 GGT3PA6NGU5 568 aa17.43■□□□□ 0.38
VPS53-216ENST00000574029 OR10H3O60404 316 aa17.43■□□□□ 0.38
VPS53-216ENST00000574029 FCN3O75636 299 aa17.43■□□□□ 0.38
VPS53-216ENST00000574029 IGHV1-69P01742 117 aa17.43■□□□□ 0.38
VPS53-216ENST00000574029 ZNF823P16415 610 aa17.43■□□□□ 0.38
VPS53-216ENST00000574029 KRTAP10-3P60369 221 aa17.43■□□□□ 0.38
VPS53-216ENST00000574029 KHDRBS1Q07666 443 aaKnown RBP eCLIP17.43■□□□□ 0.38
VPS53-216ENST00000574029 C11orf91Q3C1V1 193 aa17.43■□□□□ 0.38
VPS53-216ENST00000574029 GLYATL3Q5SZD4 288 aa17.43■□□□□ 0.38
VPS53-216ENST00000574029 METTL11BQ5VVY1 283 aa17.43■□□□□ 0.38
VPS53-216ENST00000574029 BRICD5Q6PL45 260 aa17.43■□□□□ 0.38
VPS53-216ENST00000574029 DRAM2Q6UX65 266 aa17.43■□□□□ 0.38
VPS53-216ENST00000574029 RHOUQ7L0Q8 258 aa17.43■□□□□ 0.38
VPS53-216ENST00000574029 SPERTQ8NA61 448 aa17.43■□□□□ 0.38
VPS53-216ENST00000574029 OR2AE1Q8NHA4 323 aa17.43■□□□□ 0.38
VPS53-216ENST00000574029 TBC1D15Q8TC07 691 aa17.43■□□□□ 0.38
VPS53-216ENST00000574029 DYRK2Q92630 601 aa17.43■□□□□ 0.38
VPS53-216ENST00000574029 DDOQ99489 341 aa17.43■□□□□ 0.38
VPS53-216ENST00000574029 RASSF4Q9H2L5 321 aa17.43■□□□□ 0.38
VPS53-216ENST00000574029 C1orf123Q9NWV4 160 aa17.43■□□□□ 0.38
VPS53-216ENST00000574029 MAGEL2Q9UJ55 1249 aa17.43■□□□□ 0.38
VPS53-216ENST00000574029 V9GYQ6 96 aa17.43■□□□□ 0.38
VPS53-216ENST00000574029 LHBP01229 141 aa17.42■□□□□ 0.38
VPS53-216ENST00000574029 IFNGR2P38484 337 aa17.42■□□□□ 0.38
VPS53-216ENST00000574029 SLC35F1Q5T1Q4 408 aa17.42■□□□□ 0.38
VPS53-216ENST00000574029 GCSAMQ8N6F7 178 aa17.42■□□□□ 0.38
VPS53-216ENST00000574029 TAS2R1Q9NYW7 299 aa17.42■□□□□ 0.38
VPS53-216ENST00000574029 M0QZ24 198 aa17.41■□□□□ 0.38
VPS53-216ENST00000574029 GYPAP02724 150 aa17.41■□□□□ 0.38
VPS53-216ENST00000574029 PSKH1P11801 424 aa17.41■□□□□ 0.38
VPS53-216ENST00000574029 PYCR1P32322 319 aa17.41■□□□□ 0.38
VPS53-216ENST00000574029 RPS27P42677 84 aaKnown RBP17.41■□□□□ 0.38
VPS53-216ENST00000574029 TSPAN31Q12999 210 aa17.41■□□□□ 0.38
VPS53-216ENST00000574029 TEX36Q5VZQ5 186 aa17.41■□□□□ 0.38
VPS53-216ENST00000574029 ZNF826PQ6ZT77 177 aa17.41■□□□□ 0.38
VPS53-216ENST00000574029 BTN2A1Q7KYR7 527 aa17.41■□□□□ 0.38
VPS53-216ENST00000574029 LDLRAD3Q86YD5 345 aa17.41■□□□□ 0.38
VPS53-216ENST00000574029 FAM90A1Q86YD7 464 aa17.41■□□□□ 0.38
VPS53-216ENST00000574029 GNPDA2Q8TDQ7 276 aa17.41■□□□□ 0.38
VPS53-216ENST00000574029 ZNRF4Q8WWF5 429 aa17.41■□□□□ 0.38
VPS53-216ENST00000574029 LHX4Q969G2 390 aa17.41■□□□□ 0.38
VPS53-216ENST00000574029 MMP27Q9H306 513 aa17.41■□□□□ 0.38
VPS53-216ENST00000574029 KAAG1Q9UBP8 84 aa17.41■□□□□ 0.38
VPS53-216ENST00000574029 DVL1O14640 695 aa17.4■□□□□ 0.38
VPS53-216ENST00000574029 TIMM23O14925 209 aa17.4■□□□□ 0.38
VPS53-216ENST00000574029 ECDO95905 644 aaPredicted RBP17.4■□□□□ 0.38
VPS53-216ENST00000574029 GRPP07492 148 aa17.4■□□□□ 0.38
VPS53-216ENST00000574029 MSX2P35548 267 aaPredicted RBP17.4■□□□□ 0.38
VPS53-216ENST00000574029 IER3P46695 156 aa17.4■□□□□ 0.38
VPS53-216ENST00000574029 ARF6P62330 175 aa17.4■□□□□ 0.38
VPS53-216ENST00000574029 MZT1Q08AG7 82 aa17.4■□□□□ 0.38
VPS53-216ENST00000574029 PGBD2Q6P3X8 592 aa17.4■□□□□ 0.38
VPS53-216ENST00000574029 PROKR2Q8NFJ6 384 aa17.4■□□□□ 0.38
VPS53-216ENST00000574029 OR2T4Q8NH00 348 aa17.4■□□□□ 0.38
VPS53-216ENST00000574029 LINC01006Q8NI28 216 aa17.4■□□□□ 0.38
VPS53-216ENST00000574029 RNF114Q9Y508 228 aa17.4■□□□□ 0.38
VPS53-216ENST00000574029 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP17.39■□□□□ 0.37
VPS53-216ENST00000574029 A0A0U1RQK1 487 aa17.39■□□□□ 0.37
VPS53-216ENST00000574029 TVP23AA6NH52 213 aa17.39■□□□□ 0.37
VPS53-216ENST00000574029 BHLHE40O14503 412 aa17.39■□□□□ 0.37
VPS53-216ENST00000574029 ARPC2O15144 300 aa17.39■□□□□ 0.37
VPS53-216ENST00000574029 GPR137BO60478 399 aa17.39■□□□□ 0.37
VPS53-216ENST00000574029 CLPXO76031 633 aa17.39■□□□□ 0.37
VPS53-216ENST00000574029 IGHV4-59P01825 116 aa17.39■□□□□ 0.37
VPS53-216ENST00000574029 RRM2P31350 389 aa17.39■□□□□ 0.37
VPS53-216ENST00000574029 ASPHD2Q6ICH7 369 aa17.39■□□□□ 0.37
VPS53-216ENST00000574029 LYPD4Q6UWN0 246 aa17.39■□□□□ 0.37
VPS53-216ENST00000574029 DCXRQ7Z4W1 244 aa17.39■□□□□ 0.37
VPS53-216ENST00000574029 CYB561A3Q8NBI2 242 aa17.39■□□□□ 0.37
VPS53-216ENST00000574029 OR56B2PQ8NGI1 322 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms