RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 ART3Q13508 389 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 KIAA0040Q15053 153 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 SF3B4Q15427 424 aaKnown RBP eCLIP5.23□□□□□ -1.57
VPS53-212ENST00000572259 EFNB3Q15768 340 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 SNAI3Q3KNW1 292 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 ZNF791Q3KP31 576 aaPredicted RBP5.23□□□□□ -1.57
VPS53-212ENST00000572259 VPS26BQ4G0F5 336 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 RFTN2Q52LD8 501 aaPredicted RBP5.23□□□□□ -1.57
VPS53-212ENST00000572259 PIK3CD-AS1Q5SR53 167 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 C10orf25Q5T742 122 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 CPTPQ5TA50 214 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 SLC27A4Q6P1M0 643 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 BHLHB9Q6PI77 547 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 ASCL4Q6XD76 172 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 C16orf47Q6ZP98 133 aaPredicted RBP5.23□□□□□ -1.57
VPS53-212ENST00000572259 DGAT2L6Q6ZPD8 337 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 UTS2BQ765I0 119 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 ASRGL1Q7L266 308 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 MOB3BQ86TA1 216 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 SLC34A3Q8N130 599 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 ZNF615Q8N8J6 731 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 C8orf31Q8N9H6 132 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 ZFP62Q8NB50 900 aaPredicted RBP5.23□□□□□ -1.57
VPS53-212ENST00000572259 SDR9C7Q8NEX9 313 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 OR2M7Q8NG81 312 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 OR52R1Q8NGF1 315 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 OR4D6Q8NGJ1 314 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 OR1L6Q8NGR2 347 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 DOK4Q8TEW6 326 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 SSC4DQ8WTU2 575 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 UCN3Q969E3 161 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 BPIFA2Q96DR5 249 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 ZNF681Q96N22 645 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 TSSK3Q96PN8 268 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 SLC30A2Q9BRI3 323 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 DOHHQ9BU89 302 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 HES7Q9BYE0 225 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 HIPK2Q9H2X6 1198 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 MAT2BQ9NZL9 334 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 ZNF319Q9P2F9 582 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 CLN8Q9UBY8 286 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 DAPK2Q9UIK4 370 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 POFUT2Q9Y2G5 429 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 MEMO1Q9Y316 297 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 EXPH5Q8NEV8 1989 aa5.23□□□□□ -1.57
VPS53-212ENST00000572259 TENM4Q6N022 2769 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 DOPEY1Q5JWR5 2465 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 OR6C70A6NIJ9 312 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 ZNF732B4DXR9 585 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 TOR1AO14656 332 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 ZIC3O60481 467 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 CDC40O60508 579 aaKnown RBP eCLIP5.22□□□□□ -1.57
VPS53-212ENST00000572259 SLC19A2O60779 497 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 LRATO95237 230 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 KRT16P08779 473 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 HOXD4P09016 255 aaPredicted RBP5.22□□□□□ -1.57
VPS53-212ENST00000572259 BCKDHAP12694 445 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 SDC1P18827 310 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 BGNP21810 368 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 GPX3P22352 226 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 CDC34P49427 236 aaPredicted RBP5.22□□□□□ -1.57
VPS53-212ENST00000572259 GDI2P50395 445 aaKnown RBP5.22□□□□□ -1.57
VPS53-212ENST00000572259 EMDP50402 254 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 TDGF1P3P51864 188 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 ART1P52961 327 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 SEC61BP60468 96 aaKnown RBP5.22□□□□□ -1.57
VPS53-212ENST00000572259 UBE2G2P60604 165 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 EMX2Q04743 252 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 PLCXD2Q0VAA5 305 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 RBMS2Q15434 407 aaKnown RBP5.22□□□□□ -1.57
VPS53-212ENST00000572259 TRMT12Q53H54 448 aaKnown RBP5.22□□□□□ -1.57
VPS53-212ENST00000572259 UQCC3Q6UW78 93 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 ZNF562Q6V9R5 426 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 TMEM64Q6YI46 380 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 PLEKHG7Q6ZR37 379 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 NET1Q7Z628 596 aaPredicted RBP5.22□□□□□ -1.57
VPS53-212ENST00000572259 RNF130Q86XS8 419 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 PARP8Q8N3A8 854 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 LIX1Q8N485 282 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 ZNF441Q8N8Z8 693 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 OR11H4Q8NGC9 324 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 OR9A2Q8NGT5 310 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 OR2T11Q8NH01 316 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 DYDC1Q8WWB3 177 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 IGFBPL1Q8WX77 278 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 GTF2H4Q92759 462 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 RPL36ALQ969Q0 106 aaKnown RBP5.22□□□□□ -1.57
VPS53-212ENST00000572259 TLCD1Q96CP7 247 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 FCRL1Q96LA6 429 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 ZNF597Q96LX8 424 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 JSRP1Q96MG2 331 aaPredicted RBP5.22□□□□□ -1.57
VPS53-212ENST00000572259 UHRF2Q96PU4 802 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 DPY30Q9C005 99 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 OR2B2Q9GZK3 357 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 DEFB127Q9H1M4 99 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 LRMDAQ9H2I8 198 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 TUBB1Q9H4B7 451 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 GLIPR2Q9H4G4 154 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 EGLN3Q9H6Z9 239 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 FOLH1BQ9HBA9 442 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms