RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 SP140LQ9H930 580 aa17.04■□□□□ 0.32
CLK3-225ENST00000569063 TMEM165Q9HC07 324 aa17.04■□□□□ 0.32
CLK3-225ENST00000569063 KIF17Q9P2E2 1029 aa17.04■□□□□ 0.32
CLK3-225ENST00000569063 COL6A5A8TX70 2615 aa17.03■□□□□ 0.32
CLK3-225ENST00000569063 TCF21O43680 179 aa17.03■□□□□ 0.32
CLK3-225ENST00000569063 PTBP3O95758 552 aaKnown RBP17.03■□□□□ 0.32
CLK3-225ENST00000569063 SLC2A5P22732 501 aa17.03■□□□□ 0.32
CLK3-225ENST00000569063 SCGB2A2Q13296 93 aa17.03■□□□□ 0.32
CLK3-225ENST00000569063 KLHL12Q53G59 568 aa17.03■□□□□ 0.32
CLK3-225ENST00000569063 LIPNQ5VXI9 398 aa17.03■□□□□ 0.32
CLK3-225ENST00000569063 KLBQ86Z14 1044 aa17.03■□□□□ 0.32
CLK3-225ENST00000569063 PLPP7Q8NBV4 271 aa17.03■□□□□ 0.32
CLK3-225ENST00000569063 DUS3LQ96G46 650 aaKnown RBP17.03■□□□□ 0.32
CLK3-225ENST00000569063 N6AMT1Q9Y5N5 214 aa17.03■□□□□ 0.32
CLK3-225ENST00000569063 LOC105371242A0A075B767 164 aa17.02■□□□□ 0.32
CLK3-225ENST00000569063 CEACAM18A8MTB9 384 aa17.02■□□□□ 0.32
CLK3-225ENST00000569063 A8MXK9 166 aa17.02■□□□□ 0.32
CLK3-225ENST00000569063 SELENOFO60613 162 aa17.02■□□□□ 0.32
CLK3-225ENST00000569063 ANXA2P07355 339 aaKnown RBP17.02■□□□□ 0.32
CLK3-225ENST00000569063 LYNP07948 512 aa17.02■□□□□ 0.32
CLK3-225ENST00000569063 WNT2P09544 360 aa17.02■□□□□ 0.32
CLK3-225ENST00000569063 DDOSTP39656 456 aa17.02■□□□□ 0.32
CLK3-225ENST00000569063 SEC61A1P61619 476 aaKnown RBP17.02■□□□□ 0.32
CLK3-225ENST00000569063 C1orf146Q5VVC0 180 aa17.02■□□□□ 0.32
CLK3-225ENST00000569063 BBS1Q8NFJ9 593 aa17.02■□□□□ 0.32
CLK3-225ENST00000569063 OR52H1Q8NGJ2 320 aa17.02■□□□□ 0.32
CLK3-225ENST00000569063 SGK3Q96BR1 496 aa17.02■□□□□ 0.32
CLK3-225ENST00000569063 ADAT1Q9BUB4 502 aaKnown RBP17.02■□□□□ 0.32
CLK3-225ENST00000569063 C7orf69Q9H7B7 122 aa17.02■□□□□ 0.32
CLK3-225ENST00000569063 TVP23BQ9NYZ1 205 aa17.02■□□□□ 0.32
CLK3-225ENST00000569063 OPN4Q9UHM6 478 aa17.02■□□□□ 0.32
CLK3-225ENST00000569063 AP4S1Q9Y587 144 aa17.02■□□□□ 0.32
CLK3-225ENST00000569063 G3V2T6 193 aa17.01■□□□□ 0.31
CLK3-225ENST00000569063 TBX1O43435 398 aa17.01■□□□□ 0.31
CLK3-225ENST00000569063 ZNF205O95201 554 aa17.01■□□□□ 0.31
CLK3-225ENST00000569063 H2BFMP0C1H6 154 aa17.01■□□□□ 0.31
CLK3-225ENST00000569063 IRF2P14316 349 aa17.01■□□□□ 0.31
CLK3-225ENST00000569063 ZNF121P58317 390 aaPredicted RBP17.01■□□□□ 0.31
CLK3-225ENST00000569063 ESRRGP62508 458 aa17.01■□□□□ 0.31
CLK3-225ENST00000569063 FAM3AP98173 230 aa17.01■□□□□ 0.31
CLK3-225ENST00000569063 SRSF2Q01130 221 aaKnown RBP17.01■□□□□ 0.31
CLK3-225ENST00000569063 PTGES3Q15185 160 aaKnown RBP17.01■□□□□ 0.31
CLK3-225ENST00000569063 MPPED2Q15777 294 aa17.01■□□□□ 0.31
CLK3-225ENST00000569063 SNAPC1Q16533 368 aa17.01■□□□□ 0.31
CLK3-225ENST00000569063 ZNF404Q494X3 552 aa17.01■□□□□ 0.31
CLK3-225ENST00000569063 SLC16A9Q7RTY1 509 aa17.01■□□□□ 0.31
CLK3-225ENST00000569063 C1QL2Q7Z5L3 287 aa17.01■□□□□ 0.31
CLK3-225ENST00000569063 SPERTQ8NA61 448 aa17.01■□□□□ 0.31
CLK3-225ENST00000569063 OR56B2PQ8NGI1 322 aa17.01■□□□□ 0.31
CLK3-225ENST00000569063 OR11L1Q8NGX0 322 aa17.01■□□□□ 0.31
CLK3-225ENST00000569063 LRCH1Q9Y2L9 728 aa17.01■□□□□ 0.31
CLK3-225ENST00000569063 PPIAL4AQ9Y536 164 aa17.01■□□□□ 0.31
CLK3-225ENST00000569063 A0A0A6YYJ9 748 aa17■□□□□ 0.31
CLK3-225ENST00000569063 TRAPPC2LH3BP13 241 aa17■□□□□ 0.31
CLK3-225ENST00000569063 FAM20BO75063 409 aa17■□□□□ 0.31
CLK3-225ENST00000569063 CFL1P23528 166 aaKnown RBP17■□□□□ 0.31
CLK3-225ENST00000569063 FASP25445 335 aa17■□□□□ 0.31
CLK3-225ENST00000569063 TIGD6Q17RP2 521 aa17■□□□□ 0.31
CLK3-225ENST00000569063 ESCO2Q56NI9 601 aa17■□□□□ 0.31
CLK3-225ENST00000569063 PRAMEF6Q5VXH4 476 aa17■□□□□ 0.31
CLK3-225ENST00000569063 FAM57BQ71RH2 274 aa17■□□□□ 0.31
CLK3-225ENST00000569063 HIST2H2ABQ8IUE6 130 aaPredicted RBP17■□□□□ 0.31
CLK3-225ENST00000569063 NANPQ8TBE9 248 aa17■□□□□ 0.31
CLK3-225ENST00000569063 THEM6Q8WUY1 208 aa17■□□□□ 0.31
CLK3-225ENST00000569063 REEP6Q96HR9 211 aa17■□□□□ 0.31
CLK3-225ENST00000569063 TEAD3Q99594 435 aa17■□□□□ 0.31
CLK3-225ENST00000569063 TMEM246Q9BRR3 403 aa17■□□□□ 0.31
CLK3-225ENST00000569063 OR10A2Q9H208 303 aa17■□□□□ 0.31
CLK3-225ENST00000569063 FN3KRPQ9HA64 309 aa17■□□□□ 0.31
CLK3-225ENST00000569063 MMP26Q9NRE1 261 aa17■□□□□ 0.31
CLK3-225ENST00000569063 DNAJC27Q9NZQ0 273 aa17■□□□□ 0.31
CLK3-225ENST00000569063 ZNF319Q9P2F9 582 aa17■□□□□ 0.31
CLK3-225ENST00000569063 MIOXQ9UGB7 285 aa17■□□□□ 0.31
CLK3-225ENST00000569063 ALOX5APP20292 161 aa16.99■□□□□ 0.31
CLK3-225ENST00000569063 NAA10P41227 235 aaPredicted RBP16.99■□□□□ 0.31
CLK3-225ENST00000569063 RPS7P62081 194 aaKnown RBP16.99■□□□□ 0.31
CLK3-225ENST00000569063 MZT1Q08AG7 82 aa16.99■□□□□ 0.31
CLK3-225ENST00000569063 APOFQ13790 326 aa16.99■□□□□ 0.31
CLK3-225ENST00000569063 FAM201AQ5SY85 155 aa16.99■□□□□ 0.31
CLK3-225ENST00000569063 C19orf24Q9BVV8 132 aa16.99■□□□□ 0.31
CLK3-225ENST00000569063 RGCCQ9H4X1 137 aa16.99■□□□□ 0.31
CLK3-225ENST00000569063 OCEL1Q9H607 264 aa16.99■□□□□ 0.31
CLK3-225ENST00000569063 KRT84Q9NSB2 600 aa16.99■□□□□ 0.31
CLK3-225ENST00000569063 UFSP2Q9NUQ7 469 aa16.99■□□□□ 0.31
CLK3-225ENST00000569063 KLHDC2Q9Y2U9 406 aa16.99■□□□□ 0.31
CLK3-225ENST00000569063 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP16.98■□□□□ 0.31
CLK3-225ENST00000569063 hCG_38984A0A1B0GV85 526 aa16.98■□□□□ 0.31
CLK3-225ENST00000569063 ANKRD30BLA7E2S9 258 aa16.98■□□□□ 0.31
CLK3-225ENST00000569063 FSHBP01225 129 aa16.98■□□□□ 0.31
CLK3-225ENST00000569063 FCGR1AP12314 374 aa16.98■□□□□ 0.31
CLK3-225ENST00000569063 RPS2P15880 293 aaKnown RBP16.98■□□□□ 0.31
CLK3-225ENST00000569063 ZNF12P17014 697 aa16.98■□□□□ 0.31
CLK3-225ENST00000569063 ADRA2CP18825 462 aa16.98■□□□□ 0.31
CLK3-225ENST00000569063 EPHA1P21709 976 aa16.98■□□□□ 0.31
CLK3-225ENST00000569063 ZNF154Q13106 437 aa16.98■□□□□ 0.31
CLK3-225ENST00000569063 KDM4DQ6B0I6 523 aa16.98■□□□□ 0.31
CLK3-225ENST00000569063 ZDHHC13Q8IUH4 622 aa16.98■□□□□ 0.31
CLK3-225ENST00000569063 DEFB108BQ8NET1 73 aa16.98■□□□□ 0.31
CLK3-225ENST00000569063 DVL3Q92997 716 aaPredicted RBP16.98■□□□□ 0.31
CLK3-225ENST00000569063 SSBP3Q9BWW4 388 aaPredicted RBP16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms