RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 EN2P19622 333 aaPredicted RBP12.91□□□□□ -0.34
VPS35-210ENST00000568784 CPT2P23786 658 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 SSBP1Q04837 148 aaKnown RBP12.91□□□□□ -0.34
VPS35-210ENST00000568784 PNLDC1Q8NA58 520 aaKnown RBP12.91□□□□□ -0.34
VPS35-210ENST00000568784 ZSCAN4Q8NAM6 433 aaPredicted RBP12.91□□□□□ -0.34
VPS35-210ENST00000568784 RRNAD1Q96FB5 475 aaKnown RBP12.91□□□□□ -0.34
VPS35-210ENST00000568784 PGAM5Q96HS1 289 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 AKR1E2Q96JD6 320 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 JSRP1Q96MG2 331 aaPredicted RBP12.91□□□□□ -0.34
VPS35-210ENST00000568784 CFHR5Q9BXR6 569 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 FANCFQ9NPI8 374 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 DZANK1Q9NVP4 752 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 CCDC163A0A0D9SF12 145 aa12.9□□□□□ -0.34
VPS35-210ENST00000568784 OR1D5P58170 312 aa12.9□□□□□ -0.34
VPS35-210ENST00000568784 UNC119Q13432 240 aa12.9□□□□□ -0.34
VPS35-210ENST00000568784 ZNF260Q3ZCT1 412 aa12.9□□□□□ -0.34
VPS35-210ENST00000568784 C9orf40Q8IXQ3 194 aa12.9□□□□□ -0.34
VPS35-210ENST00000568784 PIGTQ969N2 578 aa12.9□□□□□ -0.34
VPS35-210ENST00000568784 ISOC2Q96AB3 205 aa12.9□□□□□ -0.34
VPS35-210ENST00000568784 C8orf44Q96CB5 159 aa12.9□□□□□ -0.34
VPS35-210ENST00000568784 URM1Q9BTM9 101 aaKnown RBP12.9□□□□□ -0.34
VPS35-210ENST00000568784 METTL7AQ9H8H3 244 aa12.9□□□□□ -0.34
VPS35-210ENST00000568784 TAF9BQ9HBM6 251 aa12.9□□□□□ -0.34
VPS35-210ENST00000568784 ZNF304Q9HCX3 659 aa12.9□□□□□ -0.34
VPS35-210ENST00000568784 UQCC1Q9NVA1 299 aa12.9□□□□□ -0.34
VPS35-210ENST00000568784 FRG2CA6NGY1 282 aa12.9□□□□□ -0.34
VPS35-210ENST00000568784 ZNF726A6NNF4 738 aa12.9□□□□□ -0.34
VPS35-210ENST00000568784 NME2P1O60361 137 aa12.9□□□□□ -0.34
VPS35-210ENST00000568784 DUS4LO95620 317 aaKnown RBP12.9□□□□□ -0.34
VPS35-210ENST00000568784 SNU13P55769 128 aaKnown RBP12.9□□□□□ -0.34
VPS35-210ENST00000568784 RAB5BP61020 215 aa12.9□□□□□ -0.34
VPS35-210ENST00000568784 TGIF1Q15583 401 aa12.9□□□□□ -0.34
VPS35-210ENST00000568784 EIF5AL1Q6IS14 154 aaKnown RBP12.9□□□□□ -0.34
VPS35-210ENST00000568784 B3GALT1Q9Y5Z6 326 aa12.9□□□□□ -0.34
VPS35-210ENST00000568784 RER1O15258 196 aa12.9□□□□□ -0.35
VPS35-210ENST00000568784 DAP3P51398 398 aaKnown RBP12.9□□□□□ -0.35
VPS35-210ENST00000568784 CLEC18BQ6UXF7 455 aa12.9□□□□□ -0.35
VPS35-210ENST00000568784 USB1Q9BQ65 265 aaKnown RBP12.9□□□□□ -0.35
VPS35-210ENST00000568784 WDR77Q9BQA1 342 aaPredicted RBP12.9□□□□□ -0.35
VPS35-210ENST00000568784 ZFP57Q9NU63 452 aa12.9□□□□□ -0.35
VPS35-210ENST00000568784 CTSFQ9UBX1 484 aa12.9□□□□□ -0.35
VPS35-210ENST00000568784 CYB5R1Q9UHQ9 305 aa12.9□□□□□ -0.35
VPS35-210ENST00000568784 AHCTF1Q8WYP5 2266 aa12.89□□□□□ -0.35
VPS35-210ENST00000568784 CD8AP01732 235 aa12.89□□□□□ -0.35
VPS35-210ENST00000568784 H1FNTQ75WM6 255 aaPredicted RBP12.89□□□□□ -0.35
VPS35-210ENST00000568784 LRRC18Q8N456 261 aa12.89□□□□□ -0.35
VPS35-210ENST00000568784 PHOSPHO2Q8TCD6 241 aa12.89□□□□□ -0.35
VPS35-210ENST00000568784 RPS4Y2Q8TD47 263 aa12.89□□□□□ -0.35
VPS35-210ENST00000568784 EDAQ92838 391 aa12.89□□□□□ -0.35
VPS35-210ENST00000568784 WWTR1Q9GZV5 400 aa12.89□□□□□ -0.35
VPS35-210ENST00000568784 DUSP15Q9H1R2 295 aaPredicted RBP12.89□□□□□ -0.35
VPS35-210ENST00000568784 MYO7BQ6PIF6 2116 aa12.89□□□□□ -0.35
VPS35-210ENST00000568784 EML5Q05BV3 1969 aa12.89□□□□□ -0.35
VPS35-210ENST00000568784 TSPAN15O95858 294 aa12.89□□□□□ -0.35
VPS35-210ENST00000568784 TAS2R31P59538 309 aa12.89□□□□□ -0.35
VPS35-210ENST00000568784 TMEM128Q5BJH2 165 aa12.89□□□□□ -0.35
VPS35-210ENST00000568784 PABPC1L2AQ5JQF8 200 aa12.89□□□□□ -0.35
VPS35-210ENST00000568784 Q6ZRG5 221 aa12.89□□□□□ -0.35
VPS35-210ENST00000568784 RXFP4Q8TDU9 374 aa12.89□□□□□ -0.35
VPS35-210ENST00000568784 ADAM19Q9H013 955 aa12.89□□□□□ -0.35
VPS35-210ENST00000568784 RGCCQ9H4X1 137 aa12.89□□□□□ -0.35
VPS35-210ENST00000568784 MEMO1Q9Y316 297 aa12.89□□□□□ -0.35
VPS35-210ENST00000568784 FAM221AA4D161 298 aa12.89□□□□□ -0.35
VPS35-210ENST00000568784 A6NIZ1 184 aa12.89□□□□□ -0.35
VPS35-210ENST00000568784 C1orf196B1AJZ1 125 aa12.89□□□□□ -0.35
VPS35-210ENST00000568784 SFTA3P0C7M3 94 aa12.89□□□□□ -0.35
VPS35-210ENST00000568784 ADH6P28332 368 aa12.89□□□□□ -0.35
VPS35-210ENST00000568784 ZNF41P51814 821 aaPredicted RBP12.89□□□□□ -0.35
VPS35-210ENST00000568784 RAP1BP61224 184 aa12.89□□□□□ -0.35
VPS35-210ENST00000568784 RAP1AP62834 184 aa12.89□□□□□ -0.35
VPS35-210ENST00000568784 SP6Q3SY56 376 aa12.89□□□□□ -0.35
VPS35-210ENST00000568784 ZDHHC12Q96GR4 267 aa12.89□□□□□ -0.35
VPS35-210ENST00000568784 LIN37Q96GY3 246 aaPredicted RBP12.89□□□□□ -0.35
VPS35-210ENST00000568784 CCNL2Q96S94 520 aaPredicted RBP12.89□□□□□ -0.35
VPS35-210ENST00000568784 SDHAF3Q9NRP4 125 aa12.89□□□□□ -0.35
VPS35-210ENST00000568784 PPP4R1LQ9P1A2 415 aa12.89□□□□□ -0.35
VPS35-210ENST00000568784 STMND1H3BQB6 276 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 IFNA21P01568 189 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 TTRP02766 147 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 MUC1P15941 1255 aaPredicted RBP12.88□□□□□ -0.35
VPS35-210ENST00000568784 ADCYAP1P18509 176 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 ZNF345Q14585 488 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 TEX30Q5JUR7 227 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 FBRSQ9HAH7 460 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 CLDN16Q9Y5I7 305 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 A0A1B0GTI1 187 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 K7EPK0 472 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 SLC25A4P12235 298 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 OR2B8PP59922 312 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 FOXF1Q12946 379 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 SHEQ5VZ18 495 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 KIAA0895LQ68EN5 471 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 UEVLDQ8IX04 471 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 FAM71E2Q8N5Q1 922 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 EIF4E3Q8N5X7 224 aaKnown RBP12.88□□□□□ -0.35
VPS35-210ENST00000568784 HSD17B11Q8NBQ5 300 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 PHYHIPLQ96FC7 376 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 G6PC2Q9NQR9 355 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 MYO15AQ9UKN7 3530 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 ZNF850A8MQ14 1090 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms