RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 SPAG16Q8N0X2 631 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 ELMOD1Q8N336 334 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 RIBC1Q8N443 379 aaPredicted RBP2.46□□□□□ -2.02
VPS35-209ENST00000568642 ZNF491Q8N8L2 437 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 OR1M1Q8NGA1 313 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 OR9A4Q8NGU2 314 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 FGF13Q92913 245 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 VOPP1Q96AW1 172 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 CCDC126Q96EE4 140 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 SCMH1Q96GD3 660 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 UBE2E2Q96LR5 201 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 IL17FQ96PD4 163 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 EPYCQ99645 322 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 TIMP4Q99727 224 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 MICU1Q9BPX6 476 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 HOPXQ9BPY8 73 aaPredicted RBP2.46□□□□□ -2.02
VPS35-209ENST00000568642 PSD2Q9BQI7 771 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 SLC35A5Q9BS91 424 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 PAPOLGQ9BWT3 736 aaKnown RBP2.46□□□□□ -2.02
VPS35-209ENST00000568642 PLA2G12AQ9BZM1 189 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 METTL9Q9H1A3 318 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 ASCL3Q9NQ33 180 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 ABCB10Q9NRK6 738 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 TMEM45AQ9NWC5 275 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 PAK1IP1Q9NWT1 392 aaPredicted RBP2.46□□□□□ -2.02
VPS35-209ENST00000568642 VNN3Q9NY84 501 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 USE1Q9NZ43 259 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 CD274Q9NZQ7 290 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 GALPQ9UBC7 116 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 DUX4Q9UBX2 424 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 ENOPH1Q9UHY7 261 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 ACOT9Q9Y305 439 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 STYXL1Q9Y6J8 313 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 SCN8AQ9UQD0 1980 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 CACNA1CQ13936 2221 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 TDRD15B5MCY1 1934 aaKnown RBP2.46□□□□□ -2.02
VPS35-209ENST00000568642 SEC16AO15027 2179 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 ANK2Q01484 3957 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 RYR2Q92736 4967 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 FER1L5A0AVI2 2057 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 IGKV1D-8A0A087WSZ0 117 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 IGLV9-49A0A0B4J1Y8 123 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 TRBV5-4A0A0C4DH59 114 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 TSPAN11A1L157 253 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 OR2AT4A6NND4 320 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 CENPXA8MT69 81 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 C9J4A7 227 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 PRSS44E7EML9 344 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 H0Y980 276 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 RGS14O43566 566 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 FADS1O60427 444 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 CTNSO60931 367 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 ALOX12BO75342 701 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 HSBP1O75506 76 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 RBMXL2O75526 392 aaKnown RBP2.45□□□□□ -2.02
VPS35-209ENST00000568642 BCAR3O75815 825 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 SERPINA5P05154 406 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 HOXC4P09017 264 aaPredicted RBP2.45□□□□□ -2.02
VPS35-209ENST00000568642 GNAO1P09471 354 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 NBEAP1P0C6P0 100 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 LIPCP11150 499 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 MBL2P11226 248 aaPredicted RBP2.45□□□□□ -2.02
VPS35-209ENST00000568642 FOLR1P15328 257 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 ABOP16442 354 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 ATF6P18850 670 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 WT1P19544 449 aaPredicted RBP2.45□□□□□ -2.02
VPS35-209ENST00000568642 TNFRSF1BP20333 461 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 COX5AP20674 150 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 DTYMKP23919 212 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 ALDH3A1P30838 453 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 RPL3P39023 403 aaKnown RBP2.45□□□□□ -2.02
VPS35-209ENST00000568642 CYB561P49447 251 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 CEBPGP53567 150 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 AQP5P55064 265 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 CDH11P55287 796 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 DCDC1P59894 354 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 RBX1P62877 108 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 RPL31P62899 125 aaKnown RBP2.45□□□□□ -2.02
VPS35-209ENST00000568642 ACVR1Q04771 509 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 AESQ08117 197 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 IFFO1Q0D2I5 559 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 STX4Q12846 297 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 SRSF6Q13247 344 aaKnown RBP2.45□□□□□ -2.02
VPS35-209ENST00000568642 GPR17Q13304 367 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 GTF2H2Q13888 395 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 KIAA0141Q14154 515 aaPredicted RBP2.45□□□□□ -2.02
VPS35-209ENST00000568642 ZNF169Q14929 603 aaPredicted RBP2.45□□□□□ -2.02
VPS35-209ENST00000568642 GUSBP1Q15486 140 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 CHRFAM7AQ494W8 412 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 Q4G0T1 1027 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 FAM106AQ4KMX7 169 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 C14orf28Q4W4Y0 310 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 OR10J3Q5JRS4 329 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 LINC00242Q5T6M2 205 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 IRAK1BP1Q5VVH5 260 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 PWWP2BQ6NUJ5 590 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 GTF2H2CQ6P1K8 395 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 MED27Q6P2C8 311 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 ZNF730Q6ZMV8 503 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 APTXQ7Z2E3 356 aaKnown RBP2.45□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms