RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 ADARB1P78563 741 aaKnown RBP1.03□□□□□ -2.24
VPS35-207ENST00000568191 SELENBP1Q13228 472 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 MAD2L1BPQ15013 274 aaPredicted RBP1.03□□□□□ -2.24
VPS35-207ENST00000568191 QPRTQ15274 297 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 SYCP1Q15431 976 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 FBXO48Q5FWF7 155 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 TEX30Q5JUR7 227 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 ARMC12Q5T9G4 340 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 FAM228AQ86W67 206 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 CBLN2Q8IUK8 224 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 SGPP2Q8IWX5 399 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 STK40Q8N2I9 435 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 SLC35G3Q8N808 338 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 OR11H7Q8NGC8 314 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 OR52E2Q8NGJ4 325 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 OR8K3Q8NH51 312 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 KCNG3Q8TAE7 436 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 RAB3IL1Q8TBN0 382 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 CAPSLQ8WWF8 208 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 ANP32BQ92688 251 aaKnown RBP1.03□□□□□ -2.24
VPS35-207ENST00000568191 GHSRQ92847 366 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 RASD2Q96D21 266 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 ECHDC3Q96DC8 303 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 RNF145Q96MT1 663 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 SIKE1Q9BRV8 207 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 SLC39A3Q9BRY0 314 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 MARVELD1Q9BSK0 173 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 FAM192AQ9GZU8 254 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 RACGAP1Q9H0H5 632 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 XKR8Q9H6D3 395 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 EXO5Q9H790 373 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 RHBDL2Q9NX52 303 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 SLC2A8Q9NY64 477 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 TAS2R1Q9NYW7 299 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 SLC17A7Q9P2U7 560 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 STK38LQ9Y2H1 464 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 AKNAQ7Z591 1439 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 IGHV3-49A0A0A0MS15 119 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 A0A1B0GTQ1 180 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 FAM240BA0A1B0GVZ2 78 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 OR2AG2A6NM03 316 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 WRBO00258 174 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 NACADO15069 1562 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 CETN3O15182 167 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 AKR7A2O43488 359 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 DNAJB6O75190 326 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 WBP4O75554 376 aaKnown RBP1.02□□□□□ -2.25
VPS35-207ENST00000568191 OTCP00480 354 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 IGHV3-11P01762 117 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 ARG1P05089 322 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 IVLP07476 585 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 CCDC172P0C7W6 258 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 MCF2P10911 925 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 SLC2A3P11169 496 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 RALBP11234 206 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 CSNK2A2P19784 350 aaPredicted RBP1.02□□□□□ -2.25
VPS35-207ENST00000568191 GALR1P47211 349 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 ACLYP53396 1101 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 SYNJ2BPP57105 145 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 CARD18P57730 90 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 RPL23AP62750 156 aaKnown RBP1.02□□□□□ -2.25
VPS35-207ENST00000568191 SP4Q02446 784 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 SIGLEC14Q08ET2 396 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 DNAJC3Q13217 504 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 IL18Q14116 193 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 KANK1Q14678 1352 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 WDR43Q15061 677 aaKnown RBP eCLIP1.02□□□□□ -2.25
VPS35-207ENST00000568191 SSX2Q16385 188 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 MAP3K19Q56UN5 1328 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 CARD17Q5XLA6 110 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 SLC8B1Q6J4K2 584 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 H3F3CQ6NXT2 135 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 TBPL2Q6SJ96 375 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 TMEM107Q6UX40 140 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 C16orf47Q6ZP98 133 aaPredicted RBP1.02□□□□□ -2.25
VPS35-207ENST00000568191 CENPQQ7L2Z9 268 aaPredicted RBP1.02□□□□□ -2.25
VPS35-207ENST00000568191 TMEM150AQ86TG1 271 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 KIF27Q86VH2 1401 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 CDR2LQ86X02 465 aaPredicted RBP1.02□□□□□ -2.25
VPS35-207ENST00000568191 LOXHD1Q8IVV2 1947 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 UBE2J2Q8N2K1 259 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 NECAB1Q8N987 351 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 CHST4Q8NCG5 386 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 OR9K2Q8NGE7 335 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 SUN5Q8TC36 379 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 SLC2A14Q8TDB8 520 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 GPR151Q8TDV0 419 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 HGDQ93099 445 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 ITFG2Q969R8 447 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 TMEM159Q96B96 161 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 TMIGD2Q96BF3 282 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 LRRC39Q96DD0 335 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 C19orf60Q96EN9 201 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 NRBF2Q96F24 287 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 PAIP2Q9BPZ3 127 aaKnown RBP1.02□□□□□ -2.25
VPS35-207ENST00000568191 C11orf70Q9BRQ4 267 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 TMEM243Q9BU79 118 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 HAUS4Q9H6D7 363 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 AGPAT4Q9NRZ5 378 aa1.02□□□□□ -2.25
VPS35-207ENST00000568191 HRASLS2Q9NWW9 162 aa1.02□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms