RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 PSMB10P40306 273 aa16.6■□□□□ 0.25
CLN3-225ENST00000566824 TIGD6Q17RP2 521 aa16.6■□□□□ 0.25
CLN3-225ENST00000566824 LIPNQ5VXI9 398 aa16.6■□□□□ 0.25
CLN3-225ENST00000566824 LHFPL3Q86UP9 236 aa16.6■□□□□ 0.25
CLN3-225ENST00000566824 OR2Z1Q8NG97 314 aa16.6■□□□□ 0.25
CLN3-225ENST00000566824 OR10AD1Q8NGE0 317 aa16.6■□□□□ 0.25
CLN3-225ENST00000566824 OR56B2PQ8NGI1 322 aa16.6■□□□□ 0.25
CLN3-225ENST00000566824 OR52H1Q8NGJ2 320 aa16.6■□□□□ 0.25
CLN3-225ENST00000566824 C10orf105Q8TEF2 133 aa16.6■□□□□ 0.25
CLN3-225ENST00000566824 UBASH3BQ8TF42 649 aa16.6■□□□□ 0.25
CLN3-225ENST00000566824 DVL3Q92997 716 aaPredicted RBP16.6■□□□□ 0.25
CLN3-225ENST00000566824 SLC30A2Q9BRI3 323 aa16.6■□□□□ 0.25
CLN3-225ENST00000566824 OR10A2Q9H208 303 aa16.6■□□□□ 0.25
CLN3-225ENST00000566824 CYSLTR2Q9NS75 346 aa16.6■□□□□ 0.25
CLN3-225ENST00000566824 ACOXLQ9NUZ1 547 aa16.6■□□□□ 0.25
CLN3-225ENST00000566824 NKIRAS2Q9NYR9 191 aa16.6■□□□□ 0.25
CLN3-225ENST00000566824 TREM2Q9NZC2 230 aa16.6■□□□□ 0.25
CLN3-225ENST00000566824 SLC22A13Q9Y226 551 aa16.6■□□□□ 0.25
CLN3-225ENST00000566824 RPL36Q9Y3U8 105 aaKnown RBP16.6■□□□□ 0.25
CLN3-225ENST00000566824 DYSFO75923 2080 aa16.6■□□□□ 0.25
CLN3-225ENST00000566824 IGHV3-64DA0A0J9YX35 117 aa16.59■□□□□ 0.25
CLN3-225ENST00000566824 GGT3PA6NGU5 568 aa16.59■□□□□ 0.25
CLN3-225ENST00000566824 SNTNA6NMZ2 147 aa16.59■□□□□ 0.25
CLN3-225ENST00000566824 RRP9O43818 475 aaKnown RBP16.59■□□□□ 0.25
CLN3-225ENST00000566824 CDC14BO60729 498 aa16.59■□□□□ 0.25
CLN3-225ENST00000566824 TTRP02766 147 aa16.59■□□□□ 0.25
CLN3-225ENST00000566824 KRT8P05787 483 aa16.59■□□□□ 0.25
CLN3-225ENST00000566824 GSK3AP49840 483 aa16.59■□□□□ 0.25
CLN3-225ENST00000566824 MMP16P51512 607 aa16.59■□□□□ 0.25
CLN3-225ENST00000566824 OR12D2P58182 307 aa16.59■□□□□ 0.25
CLN3-225ENST00000566824 MVKQ03426 396 aa16.59■□□□□ 0.25
CLN3-225ENST00000566824 CDONQ4KMG0 1287 aa16.59■□□□□ 0.25
CLN3-225ENST00000566824 ACBD7Q8N6N7 88 aa16.59■□□□□ 0.25
CLN3-225ENST00000566824 MAPK1IP1LQ8NDC0 245 aa16.59■□□□□ 0.25
CLN3-225ENST00000566824 RORBQ92753 470 aa16.59■□□□□ 0.25
CLN3-225ENST00000566824 ELMOD3Q96FG2 381 aa16.59■□□□□ 0.25
CLN3-225ENST00000566824 TMUB1Q9BVT8 246 aa16.59■□□□□ 0.25
CLN3-225ENST00000566824 DLL4Q9NR61 685 aa16.59■□□□□ 0.25
CLN3-225ENST00000566824 GNG8Q9UK08 70 aa16.59■□□□□ 0.25
CLN3-225ENST00000566824 GTF2A1LQ9UNN4 478 aa16.59■□□□□ 0.25
CLN3-225ENST00000566824 R4GMQ9 66 aa16.59■□□□□ 0.25
CLN3-225ENST00000566824 HSPE1-MOB4S4R3N1 261 aa16.59■□□□□ 0.25
CLN3-225ENST00000566824 YLPM1P49750 1951 aaKnown RBP16.59■□□□□ 0.25
CLN3-225ENST00000566824 A0A1B0GWJ7 208 aa16.58■□□□□ 0.24
CLN3-225ENST00000566824 RNF223E7ERA6 249 aa16.58■□□□□ 0.24
CLN3-225ENST00000566824 F5H5P2 479 aa16.58■□□□□ 0.24
CLN3-225ENST00000566824 H7C1Q1 480 aa16.58■□□□□ 0.24
CLN3-225ENST00000566824 XPNPEP2O43895 674 aa16.58■□□□□ 0.24
CLN3-225ENST00000566824 FAM20BO75063 409 aa16.58■□□□□ 0.24
CLN3-225ENST00000566824 MT-ND5P03915 603 aa16.58■□□□□ 0.24
CLN3-225ENST00000566824 ERCC1P07992 297 aaPredicted RBP16.58■□□□□ 0.24
CLN3-225ENST00000566824 CD55P08174 381 aa16.58■□□□□ 0.24
CLN3-225ENST00000566824 CA6P23280 308 aa16.58■□□□□ 0.24
CLN3-225ENST00000566824 ACKR3P25106 362 aa16.58■□□□□ 0.24
CLN3-225ENST00000566824 LIPAP38571 399 aa16.58■□□□□ 0.24
CLN3-225ENST00000566824 ACTC1P68032 377 aa16.58■□□□□ 0.24
CLN3-225ENST00000566824 ACTA1P68133 377 aa16.58■□□□□ 0.24
CLN3-225ENST00000566824 RAB40BQ12829 278 aa16.58■□□□□ 0.24
CLN3-225ENST00000566824 ZNF829Q3KNS6 432 aaPredicted RBP16.58■□□□□ 0.24
CLN3-225ENST00000566824 PCGF3Q3KNV8 242 aa16.58■□□□□ 0.24
CLN3-225ENST00000566824 CLEC2AQ6UVW9 174 aa16.58■□□□□ 0.24
CLN3-225ENST00000566824 THAP5Q7Z6K1 395 aa16.58■□□□□ 0.24
CLN3-225ENST00000566824 ZNF786Q8N393 782 aa16.58■□□□□ 0.24
CLN3-225ENST00000566824 OR51E1Q8TCB6 317 aa16.58■□□□□ 0.24
CLN3-225ENST00000566824 SPRYD4Q8WW59 207 aaPredicted RBP16.58■□□□□ 0.24
CLN3-225ENST00000566824 FAM168AQ92567 244 aa16.58■□□□□ 0.24
CLN3-225ENST00000566824 GGHQ92820 318 aa16.58■□□□□ 0.24
CLN3-225ENST00000566824 SP140LQ9H930 580 aa16.58■□□□□ 0.24
CLN3-225ENST00000566824 ISG20L2Q9H9L3 353 aaKnown RBP16.58■□□□□ 0.24
CLN3-225ENST00000566824 FGF20Q9NP95 211 aaPredicted RBP16.58■□□□□ 0.24
CLN3-225ENST00000566824 ERVK13-1Q9NX77 482 aa16.58■□□□□ 0.24
CLN3-225ENST00000566824 DCAF16Q9NXF7 216 aa16.58■□□□□ 0.24
CLN3-225ENST00000566824 CGGBP1Q9UFW8 167 aaPredicted RBP16.58■□□□□ 0.24
CLN3-225ENST00000566824 NUFIP1Q9UHK0 495 aaKnown RBP16.58■□□□□ 0.24
CLN3-225ENST00000566824 ZDHHC8Q9ULC8 765 aa16.58■□□□□ 0.24
CLN3-225ENST00000566824 PCDHGB5Q9Y5G0 923 aa16.58■□□□□ 0.24
CLN3-225ENST00000566824 A0A096LNT2 108 aa16.57■□□□□ 0.24
CLN3-225ENST00000566824 ACOD1A6NK06 481 aa16.57■□□□□ 0.24
CLN3-225ENST00000566824 VWC2LB2RUY7 222 aa16.57■□□□□ 0.24
CLN3-225ENST00000566824 LOC110117498-PIK3R3F6TDL0 507 aa16.57■□□□□ 0.24
CLN3-225ENST00000566824 TPD52L2O43399 206 aaKnown RBP16.57■□□□□ 0.24
CLN3-225ENST00000566824 RP2O75695 350 aa16.57■□□□□ 0.24
CLN3-225ENST00000566824 SULT1C4O75897 302 aa16.57■□□□□ 0.24
CLN3-225ENST00000566824 IGLV3-1P01715 115 aa16.57■□□□□ 0.24
CLN3-225ENST00000566824 LIMS3P0CW19 117 aa16.57■□□□□ 0.24
CLN3-225ENST00000566824 LIMS4P0CW20 117 aa16.57■□□□□ 0.24
CLN3-225ENST00000566824 SELEP16581 610 aa16.57■□□□□ 0.24
CLN3-225ENST00000566824 KIR3DL2P43630 455 aa16.57■□□□□ 0.24
CLN3-225ENST00000566824 PDLIM4P50479 330 aa16.57■□□□□ 0.24
CLN3-225ENST00000566824 TNFAIP6P98066 277 aaPredicted RBP16.57■□□□□ 0.24
CLN3-225ENST00000566824 CATSPERDQ86XM0 798 aa16.57■□□□□ 0.24
CLN3-225ENST00000566824 PRSS35Q8N3Z0 413 aa16.57■□□□□ 0.24
CLN3-225ENST00000566824 ITLN1Q8WWA0 313 aa16.57■□□□□ 0.24
CLN3-225ENST00000566824 ALG8Q9BVK2 526 aa16.57■□□□□ 0.24
CLN3-225ENST00000566824 TMEM100Q9NV29 134 aa16.57■□□□□ 0.24
CLN3-225ENST00000566824 OR52A1Q9UKL2 312 aa16.57■□□□□ 0.24
CLN3-225ENST00000566824 A0A1B0GTI1 187 aa16.56■□□□□ 0.24
CLN3-225ENST00000566824 J3QLW9 94 aa16.56■□□□□ 0.24
CLN3-225ENST00000566824 SMAD7O15105 426 aaKnown RBP16.56■□□□□ 0.24
CLN3-225ENST00000566824 FADS2O95864 444 aaKnown RBP16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms