RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 C22orf15Q8WYQ4 148 aa17.37■□□□□ 0.37
CLN3-219ENST00000565778 NEIL1Q96FI4 390 aaPredicted RBP17.37■□□□□ 0.37
CLN3-219ENST00000565778 PLEKHA8Q96JA3 519 aa17.37■□□□□ 0.37
CLN3-219ENST00000565778 JMJD8Q96S16 334 aa17.37■□□□□ 0.37
CLN3-219ENST00000565778 ADAT1Q9BUB4 502 aaKnown RBP17.37■□□□□ 0.37
CLN3-219ENST00000565778 MRI1Q9BV20 369 aa17.37■□□□□ 0.37
CLN3-219ENST00000565778 ABHD6Q9BV23 337 aa17.37■□□□□ 0.37
CLN3-219ENST00000565778 SUCNR1Q9BXA5 334 aa17.37■□□□□ 0.37
CLN3-219ENST00000565778 TOR3AQ9H497 397 aa17.37■□□□□ 0.37
CLN3-219ENST00000565778 SP140LQ9H930 580 aa17.37■□□□□ 0.37
CLN3-219ENST00000565778 DNAJB9Q9UBS3 223 aa17.37■□□□□ 0.37
CLN3-219ENST00000565778 POMPQ9Y244 141 aa17.37■□□□□ 0.37
CLN3-219ENST00000565778 INSIG2Q9Y5U4 225 aa17.37■□□□□ 0.37
CLN3-219ENST00000565778 A8MXK9 166 aa17.36■□□□□ 0.37
CLN3-219ENST00000565778 XRCC2O43543 280 aa17.36■□□□□ 0.37
CLN3-219ENST00000565778 FAM20BO75063 409 aa17.36■□□□□ 0.37
CLN3-219ENST00000565778 FKBP6O75344 327 aa17.36■□□□□ 0.37
CLN3-219ENST00000565778 APOC1P02654 83 aa17.36■□□□□ 0.37
CLN3-219ENST00000565778 ANXA2P07355 339 aaKnown RBP17.36■□□□□ 0.37
CLN3-219ENST00000565778 ANXA8P13928 327 aa17.36■□□□□ 0.37
CLN3-219ENST00000565778 CX3CR1P49238 355 aa17.36■□□□□ 0.37
CLN3-219ENST00000565778 ZNF404Q494X3 552 aa17.36■□□□□ 0.37
CLN3-219ENST00000565778 ARMCX4Q5H9R4 360 aa17.36■□□□□ 0.37
CLN3-219ENST00000565778 PLBD1Q6P4A8 553 aa17.36■□□□□ 0.37
CLN3-219ENST00000565778 C19orf18Q8NEA5 215 aa17.36■□□□□ 0.37
CLN3-219ENST00000565778 SEMA6DQ8NFY4 1073 aa17.36■□□□□ 0.37
CLN3-219ENST00000565778 Q8TCH9 128 aa17.36■□□□□ 0.37
CLN3-219ENST00000565778 ZFAND2BQ8WV99 257 aa17.36■□□□□ 0.37
CLN3-219ENST00000565778 ZMYND19Q96E35 227 aaPredicted RBP17.36■□□□□ 0.37
CLN3-219ENST00000565778 SLC6A7Q99884 636 aa17.36■□□□□ 0.37
CLN3-219ENST00000565778 OPA3Q9H6K4 179 aa17.36■□□□□ 0.37
CLN3-219ENST00000565778 FN3KRPQ9HA64 309 aa17.36■□□□□ 0.37
CLN3-219ENST00000565778 MRPL15Q9P015 296 aaKnown RBP17.36■□□□□ 0.37
CLN3-219ENST00000565778 TRIM77I1YAP6 450 aa17.35■□□□□ 0.37
CLN3-219ENST00000565778 FSTL3O95633 263 aa17.35■□□□□ 0.37
CLN3-219ENST00000565778 GRPP07492 148 aa17.35■□□□□ 0.37
CLN3-219ENST00000565778 H2BFMP0C1H6 154 aa17.35■□□□□ 0.37
CLN3-219ENST00000565778 DDOSTP39656 456 aa17.35■□□□□ 0.37
CLN3-219ENST00000565778 HILS1P60008 231 aa17.35■□□□□ 0.37
CLN3-219ENST00000565778 CDK5Q00535 292 aa17.35■□□□□ 0.37
CLN3-219ENST00000565778 TIGD6Q17RP2 521 aa17.35■□□□□ 0.37
CLN3-219ENST00000565778 KLHL12Q53G59 568 aa17.35■□□□□ 0.37
CLN3-219ENST00000565778 NLRC3Q7RTR2 1065 aa17.35■□□□□ 0.37
CLN3-219ENST00000565778 HIST2H2ABQ8IUE6 130 aaPredicted RBP17.35■□□□□ 0.37
CLN3-219ENST00000565778 BOLLQ8N9W6 283 aaKnown RBP17.35■□□□□ 0.37
CLN3-219ENST00000565778 SPERTQ8NA61 448 aa17.35■□□□□ 0.37
CLN3-219ENST00000565778 OR8B3Q8NGG8 313 aa17.35■□□□□ 0.37
CLN3-219ENST00000565778 OR56B2PQ8NGI1 322 aa17.35■□□□□ 0.37
CLN3-219ENST00000565778 THEM6Q8WUY1 208 aa17.35■□□□□ 0.37
CLN3-219ENST00000565778 SGK3Q96BR1 496 aa17.35■□□□□ 0.37
CLN3-219ENST00000565778 OR8B2Q96RD0 313 aa17.35■□□□□ 0.37
CLN3-219ENST00000565778 TEX12Q9BXU0 123 aa17.35■□□□□ 0.37
CLN3-219ENST00000565778 MARCH7Q9H992 704 aa17.35■□□□□ 0.37
CLN3-219ENST00000565778 BRD7Q9NPI1 651 aa17.35■□□□□ 0.37
CLN3-219ENST00000565778 DNAJC27Q9NZQ0 273 aa17.35■□□□□ 0.37
CLN3-219ENST00000565778 RNF7Q9UBF6 113 aa17.35■□□□□ 0.37
CLN3-219ENST00000565778 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP17.34■□□□□ 0.37
CLN3-219ENST00000565778 TCRBV3S1A0A5B6 114 aa17.34■□□□□ 0.37
CLN3-219ENST00000565778 ANKRD30BLA7E2S9 258 aa17.34■□□□□ 0.37
CLN3-219ENST00000565778 MZT1Q08AG7 82 aa17.34■□□□□ 0.37
CLN3-219ENST00000565778 LYPD2Q6UXB3 125 aa17.34■□□□□ 0.37
CLN3-219ENST00000565778 FAM57BQ71RH2 274 aa17.34■□□□□ 0.37
CLN3-219ENST00000565778 CPOQ8IVL8 374 aa17.34■□□□□ 0.37
CLN3-219ENST00000565778 TIGD4Q8IY51 512 aa17.34■□□□□ 0.37
CLN3-219ENST00000565778 PLPP7Q8NBV4 271 aa17.34■□□□□ 0.37
CLN3-219ENST00000565778 PAPD5Q8NDF8 572 aaKnown RBP17.34■□□□□ 0.37
CLN3-219ENST00000565778 RNF133Q8WVZ7 376 aa17.34■□□□□ 0.37
CLN3-219ENST00000565778 DVL3Q92997 716 aaPredicted RBP17.34■□□□□ 0.37
CLN3-219ENST00000565778 SPSB4Q96A44 273 aa17.34■□□□□ 0.37
CLN3-219ENST00000565778 NUP50Q9UKX7 468 aa17.34■□□□□ 0.37
CLN3-219ENST00000565778 WNK2Q9Y3S1 2297 aa17.33■□□□□ 0.37
CLN3-219ENST00000565778 HAX1O00165 279 aa17.33■□□□□ 0.36
CLN3-219ENST00000565778 GSC2O15499 205 aa17.33■□□□□ 0.36
CLN3-219ENST00000565778 FSHBP01225 129 aa17.33■□□□□ 0.36
CLN3-219ENST00000565778 CD80P33681 288 aa17.33■□□□□ 0.36
CLN3-219ENST00000565778 PITPNBP48739 271 aa17.33■□□□□ 0.36
CLN3-219ENST00000565778 PAX8Q06710 450 aa17.33■□□□□ 0.36
CLN3-219ENST00000565778 TMEM236Q5W0B7 351 aa17.33■□□□□ 0.36
CLN3-219ENST00000565778 SFRP4Q6FHJ7 346 aaPredicted RBP17.33■□□□□ 0.36
CLN3-219ENST00000565778 BTNL3Q6UXE8 466 aa17.33■□□□□ 0.36
CLN3-219ENST00000565778 LRRN1Q6UXK5 716 aa17.33■□□□□ 0.36
CLN3-219ENST00000565778 C12orf54Q6X4T0 127 aa17.33■□□□□ 0.36
CLN3-219ENST00000565778 DCDC5Q6ZRR9 648 aa17.33■□□□□ 0.36
CLN3-219ENST00000565778 RHOUQ7L0Q8 258 aa17.33■□□□□ 0.36
CLN3-219ENST00000565778 SLC16A9Q7RTY1 509 aa17.33■□□□□ 0.36
CLN3-219ENST00000565778 RAB40AQ8WXH6 277 aa17.33■□□□□ 0.36
CLN3-219ENST00000565778 REEP6Q96HR9 211 aa17.33■□□□□ 0.36
CLN3-219ENST00000565778 AMELYQ99218 206 aa17.33■□□□□ 0.36
CLN3-219ENST00000565778 C14orf119Q9NWQ9 140 aa17.33■□□□□ 0.36
CLN3-219ENST00000565778 C1orf123Q9NWV4 160 aa17.33■□□□□ 0.36
CLN3-219ENST00000565778 CLN8Q9UBY8 286 aa17.33■□□□□ 0.36
CLN3-219ENST00000565778 A6NLC8 198 aa17.32■□□□□ 0.36
CLN3-219ENST00000565778 LYNP07948 512 aa17.32■□□□□ 0.36
CLN3-219ENST00000565778 ZNF121P58317 390 aaPredicted RBP17.32■□□□□ 0.36
CLN3-219ENST00000565778 RPS7P62081 194 aaKnown RBP17.32■□□□□ 0.36
CLN3-219ENST00000565778 ACTG1P63261 375 aa17.32■□□□□ 0.36
CLN3-219ENST00000565778 FAM3AP98173 230 aa17.32■□□□□ 0.36
CLN3-219ENST00000565778 KCNJ8Q15842 424 aa17.32■□□□□ 0.36
CLN3-219ENST00000565778 GFOD2Q3B7J2 385 aa17.32■□□□□ 0.36
CLN3-219ENST00000565778 RBMS3Q6XE24 437 aaKnown RBP17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms