RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 FCN3O75636 299 aa7.78□□□□□ -1.16
VPS35-206ENST00000565228 TTRP02766 147 aa7.78□□□□□ -1.16
VPS35-206ENST00000565228 ANXA2P07355 339 aaKnown RBP7.78□□□□□ -1.16
VPS35-206ENST00000565228 IGHV4-31P0DP07 118 aa7.78□□□□□ -1.16
VPS35-206ENST00000565228 DBTP11182 482 aaKnown RBP7.78□□□□□ -1.16
VPS35-206ENST00000565228 HOXB4P17483 251 aaPredicted RBP7.78□□□□□ -1.16
VPS35-206ENST00000565228 CA6P23280 308 aa7.78□□□□□ -1.16
VPS35-206ENST00000565228 PSMB10P40306 273 aa7.78□□□□□ -1.16
VPS35-206ENST00000565228 CRYBB2P43320 205 aa7.78□□□□□ -1.16
VPS35-206ENST00000565228 KIR3DL2P43630 455 aa7.78□□□□□ -1.16
VPS35-206ENST00000565228 SLC15A1P46059 708 aa7.78□□□□□ -1.16
VPS35-206ENST00000565228 PDLIM4P50479 330 aa7.78□□□□□ -1.16
VPS35-206ENST00000565228 AQP4P55087 323 aa7.78□□□□□ -1.16
VPS35-206ENST00000565228 NANOS3P60323 173 aaKnown RBP7.78□□□□□ -1.16
VPS35-206ENST00000565228 CDC42P60953 191 aa7.78□□□□□ -1.16
VPS35-206ENST00000565228 SLC34A1Q06495 639 aa7.78□□□□□ -1.16
VPS35-206ENST00000565228 MPPED2Q15777 294 aa7.78□□□□□ -1.16
VPS35-206ENST00000565228 TP53I3Q53FA7 332 aa7.78□□□□□ -1.16
VPS35-206ENST00000565228 LCN1P1Q5VSP4 162 aa7.78□□□□□ -1.16
VPS35-206ENST00000565228 PRAMEF6Q5VXH4 476 aa7.78□□□□□ -1.16
VPS35-206ENST00000565228 CLEC2AQ6UVW9 174 aa7.78□□□□□ -1.16
VPS35-206ENST00000565228 RHOUQ7L0Q8 258 aa7.78□□□□□ -1.16
VPS35-206ENST00000565228 GID4Q8IVV7 300 aa7.78□□□□□ -1.16
VPS35-206ENST00000565228 ZNF679Q8IYX0 411 aa7.78□□□□□ -1.16
VPS35-206ENST00000565228 PRSS35Q8N3Z0 413 aa7.78□□□□□ -1.16
VPS35-206ENST00000565228 TRUB1Q8WWH5 349 aaKnown RBP7.78□□□□□ -1.16
VPS35-206ENST00000565228 RORBQ92753 470 aa7.78□□□□□ -1.16
VPS35-206ENST00000565228 REEP6Q96HR9 211 aa7.78□□□□□ -1.16
VPS35-206ENST00000565228 MEGF10Q96KG7 1140 aa7.78□□□□□ -1.16
VPS35-206ENST00000565228 PBOV1Q9GZY1 135 aa7.78□□□□□ -1.16
VPS35-206ENST00000565228 DCLRE1BQ9H816 532 aa7.78□□□□□ -1.16
VPS35-206ENST00000565228 ISG20L2Q9H9L3 353 aaKnown RBP7.78□□□□□ -1.16
VPS35-206ENST00000565228 BARX1Q9HBU1 254 aaPredicted RBP7.78□□□□□ -1.16
VPS35-206ENST00000565228 ENOPH1Q9UHY7 261 aa7.78□□□□□ -1.16
VPS35-206ENST00000565228 ANK2Q01484 3957 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 LOC390937A0A1W2PQ73 354 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 VSTM5A8MXK1 200 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 FAM157AC9JC47 383 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 H3BSH0 61 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 ZNF205O95201 554 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 IGHA1P01876 353 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 TACSTD2P09758 323 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 LIMS3P0CW19 117 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 LIMS4P0CW20 117 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 TUBG1P23258 451 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 HSD11B1P28845 292 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 MTNR1AP48039 350 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 GSK3AP49840 483 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 OR12D2P58182 307 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 LMO4P61968 165 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 TNFAIP6P98066 277 aaPredicted RBP7.77□□□□□ -1.17
VPS35-206ENST00000565228 LOXL1Q08397 574 aaPredicted RBP7.77□□□□□ -1.17
VPS35-206ENST00000565228 TAF13Q15543 124 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 OR8B8Q15620 311 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 GFOD2Q3B7J2 385 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 WDR38Q5JTN6 314 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 C6orf52Q5T4I8 152 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 LIPNQ5VXI9 398 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 XAF1Q6GPH4 301 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 ARL9Q6T311 187 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 PGAP1Q75T13 922 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 KRT74Q7RTS7 529 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 RNF144BQ7Z419 303 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 KRT77Q7Z794 578 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 CATSPERDQ86XM0 798 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 C1orf174Q8IYL3 243 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 RDH10Q8IZV5 341 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 PACRGLQ8N7B6 248 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 C19orf18Q8NEA5 215 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 OR10H4Q8NGA5 316 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 OR52I1Q8NGK6 324 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 CLDND2Q8NHS1 167 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 CYGBQ8WWM9 190 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 HPSE2Q8WWQ2 592 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 TFAP2CQ92754 450 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 RDH5Q92781 318 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 ELMOD3Q96FG2 381 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 RDH12Q96NR8 316 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 OR2V2Q96R30 315 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 ADI1Q9BV57 179 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 TEX12Q9BXU0 123 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 PRRG3Q9BZD7 231 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 NARFLQ9H6Q4 476 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 GCM1Q9NP62 436 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 TUBG2Q9NRH3 451 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 ACOXLQ9NUZ1 547 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 MRPS18AQ9NVS2 196 aaKnown RBP7.77□□□□□ -1.17
VPS35-206ENST00000565228 IMPAD1Q9NX62 359 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 H2AFY2Q9P0M6 372 aaPredicted RBP7.77□□□□□ -1.17
VPS35-206ENST00000565228 GPR160Q9UJ42 338 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 RHBDD3Q9Y3P4 386 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 WNK2Q9Y3S1 2297 aa7.77□□□□□ -1.17
VPS35-206ENST00000565228 IGHV1-69-2A0A0G2JMI3 117 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 TMEM269A0A1B0GVZ9 245 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 A6NIN4 97 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 RPP14O95059 124 aaKnown RBP7.76□□□□□ -1.17
VPS35-206ENST00000565228 PTBP3O95758 552 aaKnown RBP7.76□□□□□ -1.17
VPS35-206ENST00000565228 CYB5R3P00387 301 aaPredicted RBP7.76□□□□□ -1.17
VPS35-206ENST00000565228 LALBAP00709 142 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 OR2T7P0C7T2 308 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms