RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 CELP19835 753 aa17.72■□□□□ 0.43
CLN3-212ENST00000564574 ACHEP22303 614 aa17.72■□□□□ 0.43
CLN3-212ENST00000564574 CCL1P22362 96 aa17.72■□□□□ 0.43
CLN3-212ENST00000564574 COL8A1P27658 744 aa17.72■□□□□ 0.43
CLN3-212ENST00000564574 APOBEC3AP31941 199 aaPredicted RBP17.72■□□□□ 0.43
CLN3-212ENST00000564574 SELENOVP59797 346 aa17.72■□□□□ 0.43
CLN3-212ENST00000564574 NEDD8Q15843 81 aa17.72■□□□□ 0.43
CLN3-212ENST00000564574 GFOD2Q3B7J2 385 aa17.72■□□□□ 0.43
CLN3-212ENST00000564574 ARMCX4Q5H9R4 360 aa17.72■□□□□ 0.43
CLN3-212ENST00000564574 SPATA46Q5T0L3 261 aa17.72■□□□□ 0.43
CLN3-212ENST00000564574 SYT6Q5T7P8 510 aaPredicted RBP17.72■□□□□ 0.43
CLN3-212ENST00000564574 VHLLQ6RSH7 139 aa17.72■□□□□ 0.43
CLN3-212ENST00000564574 DOK3Q7L591 496 aa17.72■□□□□ 0.43
CLN3-212ENST00000564574 SYNPRQ8TBG9 265 aa17.72■□□□□ 0.43
CLN3-212ENST00000564574 OR51E1Q8TCB6 317 aa17.72■□□□□ 0.43
CLN3-212ENST00000564574 KLF14Q8TD94 323 aaPredicted RBP17.72■□□□□ 0.43
CLN3-212ENST00000564574 FBXW5Q969U6 566 aa17.72■□□□□ 0.43
CLN3-212ENST00000564574 MRPL24Q96A35 216 aaKnown RBP17.72■□□□□ 0.43
CLN3-212ENST00000564574 GPR84Q9NQS5 396 aa17.72■□□□□ 0.43
CLN3-212ENST00000564574 PLCE1Q9P212 2302 aa17.72■□□□□ 0.43
CLN3-212ENST00000564574 RAI1Q7Z5J4 1906 aaPredicted RBP17.72■□□□□ 0.43
CLN3-212ENST00000564574 USP9YO00507 2555 aaPredicted RBP17.72■□□□□ 0.43
CLN3-212ENST00000564574 ADGRG4Q8IZF6 3080 aa17.71■□□□□ 0.43
CLN3-212ENST00000564574 hCG_38984A0A1B0GV85 526 aa17.71■□□□□ 0.43
CLN3-212ENST00000564574 P2RY10O00398 339 aa17.71■□□□□ 0.43
CLN3-212ENST00000564574 HS3ST1O14792 307 aa17.71■□□□□ 0.43
CLN3-212ENST00000564574 MTRF1O75570 445 aaKnown RBP17.71■□□□□ 0.43
CLN3-212ENST00000564574 ZFPL1O95159 310 aa17.71■□□□□ 0.43
CLN3-212ENST00000564574 CPEP16870 476 aa17.71■□□□□ 0.43
CLN3-212ENST00000564574 PSMB9P28065 219 aa17.71■□□□□ 0.43
CLN3-212ENST00000564574 EVX1P49640 407 aa17.71■□□□□ 0.43
CLN3-212ENST00000564574 Q6ZSR3 168 aa17.71■□□□□ 0.43
CLN3-212ENST00000564574 COMMD2Q86X83 199 aa17.71■□□□□ 0.43
CLN3-212ENST00000564574 ZFP41Q8N8Y5 198 aa17.71■□□□□ 0.43
CLN3-212ENST00000564574 PLPP7Q8NBV4 271 aa17.71■□□□□ 0.43
CLN3-212ENST00000564574 NEUROG1Q92886 237 aa17.71■□□□□ 0.43
CLN3-212ENST00000564574 MUL1Q969V5 352 aa17.71■□□□□ 0.43
CLN3-212ENST00000564574 HAVCR1Q96D42 359 aa17.71■□□□□ 0.43
CLN3-212ENST00000564574 CMBLQ96DG6 245 aa17.71■□□□□ 0.43
CLN3-212ENST00000564574 LYZL4Q96KX0 146 aa17.71■□□□□ 0.43
CLN3-212ENST00000564574 PGLYRP3Q96LB9 341 aa17.71■□□□□ 0.43
CLN3-212ENST00000564574 HHLA2Q9UM44 414 aa17.71■□□□□ 0.43
CLN3-212ENST00000564574 ZNF281Q9Y2X9 895 aa17.71■□□□□ 0.43
CLN3-212ENST00000564574 IGLV3-9A0A075B6K5 115 aa17.7■□□□□ 0.42
CLN3-212ENST00000564574 A0A1B0GTI1 187 aa17.7■□□□□ 0.42
CLN3-212ENST00000564574 LOC107986453A0A1B0GWG9 222 aa17.7■□□□□ 0.42
CLN3-212ENST00000564574 DHRS7CA6NNS2 312 aa17.7■□□□□ 0.42
CLN3-212ENST00000564574 SYT7O43581 403 aa17.7■□□□□ 0.42
CLN3-212ENST00000564574 INMTO95050 263 aa17.7■□□□□ 0.42
CLN3-212ENST00000564574 CLPTM1O96005 669 aa17.7■□□□□ 0.42
CLN3-212ENST00000564574 KITLGP21583 273 aa17.7■□□□□ 0.42
CLN3-212ENST00000564574 SSTR2P30874 369 aa17.7■□□□□ 0.42
CLN3-212ENST00000564574 DDOSTP39656 456 aa17.7■□□□□ 0.42
CLN3-212ENST00000564574 FABP6P51161 128 aa17.7■□□□□ 0.42
CLN3-212ENST00000564574 KLF3P57682 345 aaPredicted RBP17.7■□□□□ 0.42
CLN3-212ENST00000564574 FAM3AP98173 230 aa17.7■□□□□ 0.42
CLN3-212ENST00000564574 SLC3A1Q07837 685 aa17.7■□□□□ 0.42
CLN3-212ENST00000564574 HLXQ14774 488 aaPredicted RBP17.7■□□□□ 0.42
CLN3-212ENST00000564574 OR8B8Q15620 311 aa17.7■□□□□ 0.42
CLN3-212ENST00000564574 ADIPOQQ15848 244 aa17.7■□□□□ 0.42
CLN3-212ENST00000564574 MOGQ16653 247 aa17.7■□□□□ 0.42
CLN3-212ENST00000564574 ODF4Q2M2E3 257 aa17.7■□□□□ 0.42
CLN3-212ENST00000564574 ZNF295-AS1Q8N0V1 137 aa17.7■□□□□ 0.42
CLN3-212ENST00000564574 MS4A15Q8N5U1 240 aa17.7■□□□□ 0.42
CLN3-212ENST00000564574 GHSRQ92847 366 aa17.7■□□□□ 0.42
CLN3-212ENST00000564574 PDCD1LG2Q9BQ51 273 aa17.7■□□□□ 0.42
CLN3-212ENST00000564574 FAIMQ9NVQ4 179 aa17.7■□□□□ 0.42
CLN3-212ENST00000564574 ABCA4P78363 2273 aa17.7■□□□□ 0.42
CLN3-212ENST00000564574 GGT3PA6NGU5 568 aa17.69■□□□□ 0.42
CLN3-212ENST00000564574 DHRS3O75911 302 aa17.69■□□□□ 0.42
CLN3-212ENST00000564574 IGHV3-13P01766 116 aa17.69■□□□□ 0.42
CLN3-212ENST00000564574 OR4A8P0C604 315 aa17.69■□□□□ 0.42
CLN3-212ENST00000564574 MPV17P39210 176 aa17.69■□□□□ 0.42
CLN3-212ENST00000564574 MAP2K3P46734 347 aa17.69■□□□□ 0.42
CLN3-212ENST00000564574 GSK3AP49840 483 aa17.69■□□□□ 0.42
CLN3-212ENST00000564574 PSG7Q13046 419 aa17.69■□□□□ 0.42
CLN3-212ENST00000564574 TRAM1Q15629 374 aa17.69■□□□□ 0.42
CLN3-212ENST00000564574 EFNB3Q15768 340 aa17.69■□□□□ 0.42
CLN3-212ENST00000564574 TSTQ16762 297 aaKnown RBP17.69■□□□□ 0.42
CLN3-212ENST00000564574 MSMPQ1L6U9 139 aa17.69■□□□□ 0.42
CLN3-212ENST00000564574 YIF1BQ5BJH7 314 aa17.69■□□□□ 0.42
CLN3-212ENST00000564574 LIPKQ5VXJ0 399 aa17.69■□□□□ 0.42
CLN3-212ENST00000564574 FBXL14Q8N1E6 418 aa17.69■□□□□ 0.42
CLN3-212ENST00000564574 CSNK2A3Q8NEV1 391 aa17.69■□□□□ 0.42
CLN3-212ENST00000564574 MRPL37Q9BZE1 423 aaKnown RBP17.69■□□□□ 0.42
CLN3-212ENST00000564574 CLEC4MQ9H2X3 399 aaPredicted RBP17.69■□□□□ 0.42
CLN3-212ENST00000564574 PLK3Q9H4B4 646 aa17.69■□□□□ 0.42
CLN3-212ENST00000564574 SCOCQ9UIL1 159 aa17.69■□□□□ 0.42
CLN3-212ENST00000564574 PURGQ9UJV8 347 aaKnown RBP17.69■□□□□ 0.42
CLN3-212ENST00000564574 V9GYS6 101 aa17.69■□□□□ 0.42
CLN3-212ENST00000564574 PNMA8CA0A1B0GUJ8 204 aa17.68■□□□□ 0.42
CLN3-212ENST00000564574 A0A1W2PPR1 153 aa17.68■□□□□ 0.42
CLN3-212ENST00000564574 IQCF6A8MYZ5 107 aa17.68■□□□□ 0.42
CLN3-212ENST00000564574 B9A039 149 aa17.68■□□□□ 0.42
CLN3-212ENST00000564574 CCRL2O00421 344 aa17.68■□□□□ 0.42
CLN3-212ENST00000564574 PSMA1P25786 263 aaKnown RBP17.68■□□□□ 0.42
CLN3-212ENST00000564574 TTKP33981 857 aa17.68■□□□□ 0.42
CLN3-212ENST00000564574 SERPINF1P36955 418 aa17.68■□□□□ 0.42
CLN3-212ENST00000564574 ZBTB37Q5TC79 503 aa17.68■□□□□ 0.42
CLN3-212ENST00000564574 PHC2Q8IXK0 858 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms