RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 KIR2DL5BA0A0G2JPC4 375 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 FEZF1A0PJY2 475 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 SLC22A20A6NK97 555 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 C17orf105B2RV13 164 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 ZNF878C9JN71 531 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 GFYI3L273 518 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 CORTO00230 105 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 CASKO14936 926 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 OR7C2O60412 319 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 MRPS14O60783 128 aaKnown RBP4.43□□□□□ -1.7
VPS35-205ENST00000563984 DUSP11O75319 330 aaKnown RBP4.43□□□□□ -1.7
VPS35-205ENST00000563984 LRATO95237 230 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 SLC25A27O95847 323 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 IGHG3P01860 377 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 APOC3P02656 99 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 SFTPBP07988 381 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 OR13C7P0DN81 318 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 IRF2P14316 349 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 HOXB9P17482 250 aaPredicted RBP4.43□□□□□ -1.7
VPS35-205ENST00000563984 ALOX5APP20292 161 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 EDN2P20800 178 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 HIST1H1TP22492 207 aaPredicted RBP4.43□□□□□ -1.7
VPS35-205ENST00000563984 KDELR1P24390 212 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 RPS12P25398 132 aaKnown RBP4.43□□□□□ -1.7
VPS35-205ENST00000563984 GPR1P46091 355 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 OR3A4PP47883 348 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 RFX2P48378 723 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 METAP2P50579 478 aaKnown RBP eCLIP4.43□□□□□ -1.7
VPS35-205ENST00000563984 CLCN3P51790 818 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 ATP1B3P54709 279 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 TPI1P60174 286 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 SIRPAP78324 504 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 OR5I1Q13606 314 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 NFATC4Q14934 902 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 KIR2DS3Q14952 304 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 HLA-BQ31612 363 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 ODF3L2Q3SX64 289 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 SFT2D3Q587I9 215 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 OTUD3Q5T2D3 398 aaPredicted RBP4.43□□□□□ -1.7
VPS35-205ENST00000563984 TMEM268Q5VZI3 342 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 WDR59Q6PJI9 974 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 GSG1LQ6UXU4 331 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.43□□□□□ -1.7
VPS35-205ENST00000563984 C19orf35Q6ZS72 473 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 MBOAT2Q6ZWT7 520 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 TMPRSS11BQ86T26 416 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 MARCH9Q86YJ5 346 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 APRG1Q8IVJ8 170 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 KIR2DL5AQ8N109 375 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 CBR4Q8N4T8 237 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 JAGN1Q8N5M9 183 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 C15orf54Q8N8G6 183 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 ACOT4Q8N9L9 421 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 OR52E4Q8NGH9 312 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 OR5M9Q8NGP3 310 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 OR52I2Q8NH67 350 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 OR13C6PQ8NH95 151 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 OR14A16Q8NHC5 309 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 KIR2DL5BQ8NHK3 375 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 C2CD4CQ8TF44 421 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 PCNPQ8WW12 178 aaKnown RBP4.43□□□□□ -1.7
VPS35-205ENST00000563984 MRPS31Q92665 395 aaKnown RBP4.43□□□□□ -1.7
VPS35-205ENST00000563984 APH1AQ96BI3 265 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 FLYWCH2Q96CP2 140 aaKnown RBP4.43□□□□□ -1.7
VPS35-205ENST00000563984 RCN3Q96D15 328 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 BTF3L4Q96K17 158 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 KCTD7Q96MP8 289 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 GUCD1Q96NT3 240 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 OR2M4Q96R27 311 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 OR52B2Q96RD2 323 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 SIGMAR1Q99720 223 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 KCTD14Q9BQ13 255 aaPredicted RBP4.43□□□□□ -1.7
VPS35-205ENST00000563984 C20orf144Q9BQM9 153 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 C20orf85Q9H1P6 137 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 ABCG5Q9H222 651 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 SPANXCQ9NY87 97 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 NLKQ9UBE8 527 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 P2RX2Q9UBL9 471 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 ZNF346Q9UL40 294 aaKnown RBP4.43□□□□□ -1.7
VPS35-205ENST00000563984 SAMD4AQ9UPU9 718 aaKnown RBP4.43□□□□□ -1.7
VPS35-205ENST00000563984 MST1RQ04912 1400 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 DIP2AQ14689 1571 aa4.43□□□□□ -1.7
VPS35-205ENST00000563984 ZC3H13Q5T200 1668 aaKnown RBP4.42□□□□□ -1.7
VPS35-205ENST00000563984 CFAP43Q8NDM7 1665 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 MEIKINA0A087WXM9 373 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 PNMA8CA0A1B0GUJ8 204 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 CLDN24A6NM45 220 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 USP17L23D6RBM5 183 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 MANBAO00462 879 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 UBFD1O14562 309 aaKnown RBP4.42□□□□□ -1.7
VPS35-205ENST00000563984 PDCD5O14737 125 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 TNFSF11O14788 317 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 TNFRSF13BO14836 293 aaPredicted RBP4.42□□□□□ -1.7
VPS35-205ENST00000563984 ABCC5O15440 1437 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 FGF16O43320 207 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 SLC16A7O60669 478 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 FOXH1O75593 365 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 STK16O75716 305 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 MMP23AO75900 390 aa4.42□□□□□ -1.7
VPS35-205ENST00000563984 SYNGR4O95473 234 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms