RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 KCNJ16Q9NPI9 418 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 STEAP1Q9UHE8 339 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 ETV7Q9Y603 341 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 V9GYH0 126 aa7.81□□□□□ -1.16
VPS39-207ENST00000563692 TRAV8-7A0A075B6U6 113 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 A0A0U1RQV5 110 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 FAM90A27PA6NNH2 459 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 M0R135 149 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 DOK2O60496 412 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 SS18L1O75177 396 aaPredicted RBP7.8□□□□□ -1.16
VPS39-207ENST00000563692 TGM6O95932 706 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 PAHP00439 452 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 IGHV3-9P01782 118 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 SNRPBP14678 240 aaKnown RBP7.8□□□□□ -1.16
VPS39-207ENST00000563692 ZNF32P17041 273 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 IGFBP3P17936 291 aaPredicted RBP7.8□□□□□ -1.16
VPS39-207ENST00000563692 RAB3AP20336 220 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 BDKRB2P30411 391 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 SSTR2P30874 369 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 ART1P52961 327 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 PSG4Q00888 419 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 IFITM3Q01628 133 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 TGFBR3Q03167 851 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 PLP2Q04941 152 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 GTF3C1Q12789 2109 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 RIN1Q13671 783 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 RAB11BQ15907 218 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 FBXW9Q5XUX1 488 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 TRIQKQ629K1 86 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 STEAP3Q658P3 488 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 TMEM53Q6P2H8 277 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 Q6ZNX1 250 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 DCDC5Q6ZRR9 648 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 ZNF627Q7L945 461 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 LINGO2Q7L985 606 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 NUFIP2Q7Z417 695 aaKnown RBP7.8□□□□□ -1.16
VPS39-207ENST00000563692 CENPSQ8N2Z9 138 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 Q8N402 240 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 OR8B12Q8NGG6 310 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 LILRB4Q8NHJ6 448 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 RAB40AQ8WXH6 277 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 NANOS1Q8WY41 292 aaKnown RBP7.8□□□□□ -1.16
VPS39-207ENST00000563692 HTRA1Q92743 480 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 C10orf35Q96D05 121 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 ORAI1Q96D31 301 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 ZNF799Q96GE5 643 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 SPOCK3Q9BQ16 436 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 OR2H1Q9GZK4 316 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 PPP1R3EQ9H7J1 279 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 LIN7BQ9HAP6 207 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 NEK6Q9HC98 313 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 ATPIF1Q9UII2 106 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 ZNF391Q9UJN7 358 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 PKDREJQ9NTG1 2253 aa7.8□□□□□ -1.16
VPS39-207ENST00000563692 UTP20O75691 2785 aaKnown RBP7.79□□□□□ -1.16
VPS39-207ENST00000563692 NBPF19A0A087WUL8 3843 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 A0A1B0GTI1 187 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 SLC17A2O00624 439 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 SYNGR3O43761 229 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 TPPPO94811 219 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 UBL3O95164 117 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 CNOT4O95628 575 aaKnown RBP7.79□□□□□ -1.16
VPS39-207ENST00000563692 PTTG1O95997 202 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 LCATP04180 440 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 EIF4EP06730 217 aaKnown RBP7.79□□□□□ -1.16
VPS39-207ENST00000563692 COX5BP10606 129 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 IL7P13232 177 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 PRF1P14222 555 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 ADRA2CP18825 462 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 CCL1P22362 96 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 CFPP27918 469 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 MPGP29372 298 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 AGTR1P30556 359 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 OTX1P32242 354 aaPredicted RBP7.79□□□□□ -1.16
VPS39-207ENST00000563692 DDOSTP39656 456 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 OR3A2P47893 321 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 HTR5AP47898 357 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 OXA1LQ15070 435 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 ZNF79Q15937 498 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 C1orf185Q5T7R7 199 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 HACD4Q5VWC8 232 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 ZNF774Q6NX45 483 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 ANKRD16Q6P6B7 361 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 MEX3BQ6ZN04 569 aaKnown RBP7.79□□□□□ -1.16
VPS39-207ENST00000563692 FAM214BQ7L5A3 538 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.79□□□□□ -1.16
VPS39-207ENST00000563692 ADGRE4PQ86SQ3 457 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 CDH26Q8IXH8 852 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 CCDC36Q8IYA8 594 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 OR1M1Q8NGA1 313 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 OR4M1Q8NGD0 313 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 OR6M1Q8NGM8 313 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 OR5H6Q8NGV6 325 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 ITFG2Q969R8 447 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 PHF21AQ96BD5 680 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 LRRC46Q96FV0 321 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 SORCS2Q96PQ0 1159 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 GFI1Q99684 422 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 RGCCQ9H4X1 137 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 C12orf49Q9H741 205 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms